Cholic acid
Everything that changed this flow. Back to the flow
92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 4 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'E 1000' (grade code), 'NSC-6135' (registry code) |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | cas=81-25-4; cc_chebi_agreed_name='Cholic acid'; object_uuid=fo-7baef64da66efcd8 |
| cas_match_labels | 1 | consensus_match | group_key=3,7,12-trihydroxycholan-24-oicacid||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'81-25-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-7baef64da66efcd8: {'81-25-4': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['81-25-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16359']; candidate_pubchem_cids=[303, 6676, 221493, 229151, 239672, 637625, 5302608, 5460314, 16212151, 44135469, 46783697, 59316662, 118855414, 138107312, 145714625]; selected_pubchem_cids=[221493]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
23| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 1,690 | bootstrap_labels | prefLabel | — | [{"@value":"3,7,12-trihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","p… | Bootstrapped prefLabel from legacy name field |
| 1,691 | bootstrap_labels | name | 3,7,12-trihydroxycholan-24-oic acid | — | Purged legacy name field to enforce prefLabel usage |
| 1,692 | bootstrap_labels | synonyms | ["cholicacid","(4r)-4-[(1s,2s,5r,7s,9r,10r,11s,14r,15r,16s)-5,9,16-trihydroxy-2,15-dimethyltetracyclo[8.7.0.0â²,â?·.0â¹… | [] | Removed legacy synonyms field in favor of structured labels |
| 136,906 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Ground level","population_density":"Urban (>1000 people/square mil… | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 136,907 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-grle-ur10pesq | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 213,902 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 221,484 | normalize_name_case | prefLabel | [{"@value":"3,7,12-trihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","p… | [{"@value":"3,7,12-trihydroxycholan-24-oic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","p… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 228,808 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O5"]… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 228,809 | enrich_references | skos_definition | — | [{"@value":"A bile acid that is 5β-cholan-24-oic acid bearing three α-hydroxy substituents at position 3, 7 and 12.","@… | Merged ChEBI/PubChem definitions into skos:definition |
| 228,810 | enrich_references | references | [] | [{"@id":"drugcentral:3096","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['81-25-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16359']; candidate_pubchem_cids=[303, 6676, 221493, 229151, 239672, 637625, 5302608, 5460314, 16212151, 44135469, 46783697, 59316662, 118855414, 138107312, 145714625]; selected_pubchem_cids=[221493]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 248,788 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O5"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O5"]… | rdkit_pre_consensus from 'CC(CCC(=O)O)C1CCC2C1(C(CC3C2C(CC4C3(CCC(C4)O)C)O)O)C'; added: inchi2d_string, monoisotopic_mass |
| 254,575 | chebi_altlabels | altLabel | [] | [{"@value":"(3alpha,5beta,7alpha,12alpha)-3,7,12-trihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGene… | Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 261,660 | consensus_match | prefLabel | [{"@value":"3,7,12-trihydroxycholan-24-oic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","p… | [{"@value":"Cholic acid","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"con… | cas=81-25-4; cc_chebi_agreed_name='Cholic acid'; object_uuid=fo-7baef64da66efcd8 |
| 261,661 | consensus_match | altLabel | [{"@value":"(3alpha,5beta,7alpha,12alpha)-3,7,12-trihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGene… | [{"@value":"(3alpha,5beta,7alpha,12alpha)-3,7,12-trihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGene… | cas=81-25-4; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-7baef64da66efcd8 |
| 261,662 | consensus_match | altLabel | [{"@value":"(3alpha,5beta,7alpha,12alpha)-3,7,12-trihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGene… | [{"@value":"(3alpha,5beta,7alpha,12alpha)-3,7,12-trihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGene… | group_key=3,7,12-trihydroxycholan-24-oicacid||dimension=Environmental > media=Water > water_body=Surface water; cas=81-25-4; added Common Chemistry CAS names as altLabel: (3α,5β,7α,12α)-3,7,12-Trihydroxycholan-24-oic acid, 17β-[1-Methyl-3-carboxypropyl]etiocholane-3α,7α,12α-triol, 3α,7α,12α-Trihydroxy-5β-cholan-24-oic acid, 3α,7α,12α-Trihydroxy-5β-cholanic acid, 3α,7α,12α-Trihydroxy-5β-cholanoic acid, 3α,7α,12α-Trihydroxy-β-cholanic acid, 3α,7α,12α-Trihydroxycholanic acid, 5β-Cholanic acid, 3α,7α,12α-trihydroxy-, 5β-Cholanic acid-3α,7α,12α-triol, 5β-Cholic acid, Cholalic acid, Cholalin, Cholan-24-oic acid, 3,7,12-trihydroxy-, (3α,5β,7α,12α)-, Cholbam, Colalin, E 1000, Kolbam, MeSH ID: D002793, MeSH ID: D019826, NSC-6135, Orphacol; object_uuid=fo-7baef64da66efcd8 |
| 261,663 | consensus_match | cas_match_labels | — | {"81-25-4":"exactMatch"} | group_key=3,7,12-trihydroxycholan-24-oicacid||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'81-25-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-7baef64da66efcd8: {'81-25-4': 'exactMatch'} |
| 273,906 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O5"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O5"]… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(3alpha,5beta,7alpha,12alpha)-3,7,12-trihydroxycholan-24-oic acid' |
| 280,299 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O5"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O5"]… | rdkit_post_consensus from 'C[C@H](CCC(=O)O)[C@H]1CC[C@H]2[C@@H]3[C@H](O)C[C@@H]4C[C@H](O)CC[C@]4(C)[C@H]3C[C@H](O)[C@]12C'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 287,584 | strip_catalogue_altlabels | altLabel | [{"@value":"(3alpha,5beta,7alpha,12alpha)-3,7,12-trihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGene… | [{"@value":"(3alpha,5beta,7alpha,12alpha)-3,7,12-trihydroxycholan-24-oic acid","@language":"en","source":{"prov:wasGene… | Removed 2 catalogue altLabel value(s): 'E 1000' (grade code), 'NSC-6135' (registry code) |
| 349,442 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/92c49a5f-4804-… | associations resolved on the elementary layer |
| 388,190 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O5"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O5"]… | typed the way the ontology types it |
| 394,821 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 394,822 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O5"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C24H40O5"]… | the substance's answer, copied onto its flow |
PROV-O trail
23 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1812399309960000/1690 | prefLabel | ef:agent/bootstrap_labels | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v0 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v1 |
| ef:activity/change/20260820T1812399309960000/1691 | name | ef:agent/bootstrap_labels | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v1 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v2 |
| ef:activity/change/20260820T1812399309960000/1692 | synonyms | ef:agent/bootstrap_labels | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v2 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v3 |
| ef:activity/change/20260820T1812399309960000/136906 | context | ef:agent/default_context_mapping | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v3 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v4 |
| ef:activity/change/20260820T1812399309960000/136907 | context_iri | ef:agent/default_context_mapping | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v4 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v5 |
| ef:activity/change/20260820T1812399309960000/213902 | unit_iri | ef:agent/unit_normalization | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v5 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v6 |
| ef:activity/change/20260820T1812399309960000/221484 | prefLabel | ef:agent/normalize_name_case | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v6 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v7 |
| ef:activity/change/20260820T1812399309960000/228808 | properties | ef:agent/enrich_references | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v7 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v8 |
| ef:activity/change/20260820T1812399309960000/228809 | skos_definition | ef:agent/enrich_references | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v8 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v9 |
| ef:activity/change/20260820T1812399309960000/228810 | references | ef:agent/enrich_references | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v9 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v10 |
| ef:activity/change/20260820T1812399309960000/248788 | properties | ef:agent/rdkit_pre_consensus | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v10 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v11 |
| ef:activity/change/20260820T1812399309960000/254575 | altLabel | ef:agent/chebi_altlabels | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v11 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v12 |
| ef:activity/change/20260820T1812399309960000/261660 | prefLabel | ef:agent/consensus_match | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v12 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v13 |
| ef:activity/change/20260820T1812399309960000/261661 | altLabel | ef:agent/consensus_match | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v13 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v14 |
| ef:activity/change/20260820T1812399309960000/261662 | altLabel | ef:agent/consensus_match | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v14 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v15 |
| ef:activity/change/20260820T1812399309960000/261663 | cas_match_labels | ef:agent/consensus_match | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v15 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v16 |
| ef:activity/change/20260820T1812399309960000/273906 | properties | ef:agent/opsin_iupac | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v16 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v17 |
| ef:activity/change/20260820T1812399309960000/280299 | properties | ef:agent/rdkit_post_consensus | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v17 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v18 |
| ef:activity/change/20260820T1812399309960000/287584 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v18 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v19 |
| ef:activity/change/20260820T1812399309960000/349442 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v19 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v20 |
| ef:activity/change/20260820T1812399309960000/388190 | properties | ef:agent/normalise_property_values | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v20 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v21 |
| ef:activity/change/20260820T1812399309960000/394821 | types | ef:agent/link_flows_to_their_substance | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v21 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v22 |
| ef:activity/change/20260820T1812399309960000/394822 | properties | ef:agent/link_flows_to_their_substance | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v22 | ef:flow/92c49a5f-4804-45ec-b4b1-a8e4ff5a34c2/v23 |