Xanthone
Everything that changed this flow. Back to the flow
9387aa39-261a-41f1-9b01-04f4dfb4397b
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 4 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 14978' (registry code) |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | cas=90-47-1; cc_chebi_agreed_name='Xanthone'; object_uuid=fo-9e875c64f3ce0021 |
| cas_match_labels | 1 | consensus_match | group_key=xanthen-9-one||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'90-47-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-9e875c64f3ce0021: {'90-47-1': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['90-47-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_37647']; candidate_pubchem_cids=[7020]; selected_pubchem_cids=[7020]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
23| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 22,391 | bootstrap_labels | prefLabel | — | [{"@value":"xanthen-9-one","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | Bootstrapped prefLabel from legacy name field |
| 22,392 | bootstrap_labels | name | xanthen-9-one | — | Purged legacy name field to enforce prefLabel usage |
| 22,393 | bootstrap_labels | synonyms | ["9-Oxoxanthene","9-Xanthenone","9-Xanthone","9H-Xanthen-9-one","9H-Xanthene, 9-oxo-","AC-907/21098006","AC1L1NTM","AKO… | [] | Removed legacy synonyms field in favor of structured labels |
| 137,500 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 137,501 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-agri | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 220,452 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 226,138 | normalize_name_case | prefLabel | [{"@value":"xanthen-9-one","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | [{"@value":"Xanthen-9-one","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 247,400 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H8O2"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 247,401 | enrich_references | skos_definition | — | [{"@value":"The parent compound of the xanthone class consisting of xanthene bearing a single oxo substituent at positi… | Merged ChEBI/PubChem definitions into skos:definition |
| 247,402 | enrich_references | references | [] | [{"@id":"gmelin:166003","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"con… | Added references with provenance; cas_numbers=['90-47-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_37647']; candidate_pubchem_cids=[7020]; selected_pubchem_cids=[7020]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 254,156 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H8O2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H8O2"],… | rdkit_pre_consensus from 'C1=CC=C2C(=C1)C(=O)C3=CC=CC=C3O2'; added: monoisotopic_mass |
| 257,198 | chebi_altlabels | altLabel | [] | [{"@value":"9-oxoxanthene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… | Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 273,290 | consensus_match | prefLabel | [{"@value":"Xanthen-9-one","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | [{"@value":"Xanthone","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"consen… | cas=90-47-1; cc_chebi_agreed_name='Xanthone'; object_uuid=fo-9e875c64f3ce0021 |
| 273,291 | consensus_match | altLabel | [{"@value":"9-oxoxanthene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… | [{"@value":"9-oxoxanthene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… | cas=90-47-1; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-9e875c64f3ce0021 |
| 273,292 | consensus_match | altLabel | [{"@value":"9-oxoxanthene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… | [{"@value":"9-oxoxanthene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… | group_key=xanthen-9-one||dimension=Environmental > media=Ground > geography=Non-agricultural; cas=90-47-1; added Common Chemistry CAS names as altLabel: 9<em>H</em>-Xanthene, 9-oxo-, Dibenzo-γ-pyrone, Dibenzo[<em>b</em>,<em>e</em>]pyran-10-one, NSC 14978; object_uuid=fo-9e875c64f3ce0021 |
| 273,293 | consensus_match | cas_match_labels | — | {"90-47-1":"exactMatch"} | group_key=xanthen-9-one||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'90-47-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-9e875c64f3ce0021: {'90-47-1': 'exactMatch'} |
| 279,371 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H8O2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H8O2"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Xanthone' |
| 286,248 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H8O2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H8O2"],… | rdkit_post_consensus from 'O=c1c2ccccc2oc2ccccc12'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 291,612 | strip_catalogue_altlabels | altLabel | [{"@value":"9-oxoxanthene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… | [{"@value":"9-oxoxanthene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… | Removed 1 catalogue altLabel value(s): 'NSC 14978' (registry code) |
| 349,770 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/9387aa39-261a-… | associations resolved on the elementary layer |
| 393,767 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H8O2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H8O2"],… | typed the way the ontology types it |
| 402,933 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 402,934 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_24852","rdfs:label":"insecticide","http://www.w3.org/2004/02/skos/core#de… | the substance's answer, copied onto its flow |
PROV-O trail
23 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/22391 | prefLabel | ef:agent/bootstrap_labels | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v0 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v1 |
| ef:activity/change/20260820T0738569779880000/22392 | name | ef:agent/bootstrap_labels | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v1 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v2 |
| ef:activity/change/20260820T0738569779880000/22393 | synonyms | ef:agent/bootstrap_labels | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v2 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v3 |
| ef:activity/change/20260820T0738569779880000/137500 | context | ef:agent/default_context_mapping | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v3 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v4 |
| ef:activity/change/20260820T0738569779880000/137501 | context_iri | ef:agent/default_context_mapping | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v4 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v5 |
| ef:activity/change/20260820T0738569779880000/220452 | unit_iri | ef:agent/unit_normalization | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v5 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v6 |
| ef:activity/change/20260820T0738569779880000/226138 | prefLabel | ef:agent/normalize_name_case | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v6 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v7 |
| ef:activity/change/20260820T0738569779880000/247400 | properties | ef:agent/enrich_references | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v7 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v8 |
| ef:activity/change/20260820T0738569779880000/247401 | skos_definition | ef:agent/enrich_references | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v8 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v9 |
| ef:activity/change/20260820T0738569779880000/247402 | references | ef:agent/enrich_references | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v9 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v10 |
| ef:activity/change/20260820T0738569779880000/254156 | properties | ef:agent/rdkit_pre_consensus | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v10 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v11 |
| ef:activity/change/20260820T0738569779880000/257198 | altLabel | ef:agent/chebi_altlabels | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v11 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v12 |
| ef:activity/change/20260820T0738569779880000/273290 | prefLabel | ef:agent/consensus_match | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v12 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v13 |
| ef:activity/change/20260820T0738569779880000/273291 | altLabel | ef:agent/consensus_match | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v13 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v14 |
| ef:activity/change/20260820T0738569779880000/273292 | altLabel | ef:agent/consensus_match | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v14 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v15 |
| ef:activity/change/20260820T0738569779880000/273293 | cas_match_labels | ef:agent/consensus_match | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v15 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v16 |
| ef:activity/change/20260820T0738569779880000/279371 | properties | ef:agent/opsin_iupac | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v16 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v17 |
| ef:activity/change/20260820T0738569779880000/286248 | properties | ef:agent/rdkit_post_consensus | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v17 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v18 |
| ef:activity/change/20260820T0738569779880000/291612 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v18 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v19 |
| ef:activity/change/20260820T0738569779880000/349770 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v19 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v20 |
| ef:activity/change/20260820T0738569779880000/393767 | properties | ef:agent/normalise_property_values | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v20 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v21 |
| ef:activity/change/20260820T0738569779880000/402933 | types | ef:agent/link_flows_to_their_substance | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v21 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v22 |
| ef:activity/change/20260820T0738569779880000/402934 | roles | ef:agent/link_flows_to_their_substance | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v22 | ef:flow/9387aa39-261a-41f1-9b01-04f4dfb4397b/v23 |