Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 6 enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus the substance's answer, copied onto its flow
altLabel 3 chebi_altlabels, consensus_match, dedupe_altlabels Deduplicated altLabel values and removed entries matching prefLabel
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=epigallocatechingallate||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'pubchem']; cas_sources={'989-51-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-ac6bad702931d36d: {'989-51-5': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['989-51-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_4806']; candidate_pubchem_cids=[1287, 65064, 199472, 2824823, 44134699, 91658951, 138059324]; selected_pubchem_cids=[65064]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

21
# Step Field From To Why
17,991 bootstrap_labels prefLabel [{"@value":"epigallocatechin gallate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttr… Bootstrapped prefLabel from legacy name field
17,992 bootstrap_labels name epigallocatechin gallate Purged legacy name field to enforce prefLabel usage
17,993 bootstrap_labels synonyms ["no info","teavigo"] [] Removed legacy synonyms field in favor of structured labels
137,808 default_context_mapping context {"dimension":"Environmental","media":"Air","indoor":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
137,809 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
219,230 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,202 normalize_name_case prefLabel [{"@value":"epigallocatechin gallate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttr… [{"@value":"Epigallocatechin Gallate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttr… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
244,031 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H18O11"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
244,032 enrich_references skos_definition [{"@value":"A gallate ester obtained by the formal condensation of gallic acid with the (3R)-hydroxy group of (−)-epiga… Merged ChEBI/PubChem definitions into skos:definition
244,033 enrich_references references [] [{"@id":"beilstein:3658838","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['989-51-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_4806']; candidate_pubchem_cids=[1287, 65064, 199472, 2824823, 44134699, 91658951, 138059324]; selected_pubchem_cids=[65064]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,173 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H18O11"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H18O11"… rdkit_pre_consensus from 'C1C(C(OC2=CC(=CC(=C21)O)O)C3=CC(=C(C(=C3)O)O)O)OC(=O)C4=CC(=C(C(=C4)O)O)O'; added: inchi2d_string, monoisotopic_mass
256,751 chebi_altlabels altLabel [] [{"@value":"(-)-epigallocatechin 3-O-gallate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:… Added 12 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
266,699 consensus_match altLabel [{"@value":"(-)-epigallocatechin 3-O-gallate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:… [{"@value":"(-)-epigallocatechin 3-O-gallate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:… group_key=epigallocatechingallate||dimension=Environmental > media=Water > water_body=Long-term; cas=989-51-5; added Common Chemistry CAS names as altLabel: (-)-<em>epi</em>-Gallocatechin 3-<em>O</em>-gallate, (-)-Epigallocatechin 3-gallate, (2<em>R</em>,3<em>R</em>)-5,7-Dihydroxy-2-(3,4,5-trihydroxyphenyl)chroman-3-yl 3,4,5-trihydroxybenzoate, <em>epi</em>-Gallocatechin 3-<em>O</em>-gallate, <em>epi</em>-Gallocatechin gallate, Benzoic acid, 3,4,5-trihydroxy-, (2<em>R</em>,3<em>R</em>)-3,4-dihydro-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-2<em>H</em>-1-benzopyran-3-yl ester, Benzoic acid, 3,4,5-trihydroxy-, 3,4-dihydro-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-2<em>H</em>-1-benzopyran-3-yl ester, (2<em>R</em>-<em>cis</em>)-, EGCg-OP, Epigallocatechin-3-monogallate, Epigallocatechol, 3-gallate, Epigallocatechol, 3-gallate, (-)-, Epigallocatechol, gallate, Gallic acid, 3-ester with epigallocatechol, (-)-, PF-EGCg 90, Teafuran 90S, Teavigo, Theliokeep; object_uuid=fo-ac6bad702931d36d
266,700 consensus_match cas_match_labels {"989-51-5":"exactMatch"} group_key=epigallocatechingallate||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'pubchem']; cas_sources={'989-51-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-ac6bad702931d36d: {'989-51-5': 'exactMatch'}
278,378 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H18O11"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H18O11"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate'
285,137 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H18O11"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H18O11"… rdkit_post_consensus from 'O=C(O[C@@H]1Cc2c(O)cc(O)cc2O[C@@H]1c1cc(O)c(O)c(O)c1)c1cc(O)c(O)c(O)c1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
292,967 dedupe_altlabels altLabel [{"@value":"(-)-epigallocatechin 3-O-gallate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:… [{"@value":"(-)-epigallocatechin 3-O-gallate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:… Deduplicated altLabel values and removed entries matching prefLabel
349,904 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/94193428-2016-… associations resolved on the elementary layer
392,744 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H18O11"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H18O11"… typed the way the ontology types it
401,357 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
401,358 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H18O11"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H18O11"… the substance's answer, copied onto its flow

PROV-O trail

21 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260822T0600486828500000/17991 prefLabel ef:agent/bootstrap_labels ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v0 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v1
ef:activity/change/20260822T0600486828500000/17992 name ef:agent/bootstrap_labels ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v1 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v2
ef:activity/change/20260822T0600486828500000/17993 synonyms ef:agent/bootstrap_labels ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v2 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v3
ef:activity/change/20260822T0600486828500000/137808 context ef:agent/default_context_mapping ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v3 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v4
ef:activity/change/20260822T0600486828500000/137809 context_iri ef:agent/default_context_mapping ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v4 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v5
ef:activity/change/20260822T0600486828500000/219230 unit_iri ef:agent/unit_normalization ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v5 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v6
ef:activity/change/20260822T0600486828500000/225202 prefLabel ef:agent/normalize_name_case ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v6 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v7
ef:activity/change/20260822T0600486828500000/244031 properties ef:agent/enrich_references ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v7 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v8
ef:activity/change/20260822T0600486828500000/244032 skos_definition ef:agent/enrich_references ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v8 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v9
ef:activity/change/20260822T0600486828500000/244033 references ef:agent/enrich_references ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v9 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v10
ef:activity/change/20260822T0600486828500000/253173 properties ef:agent/rdkit_pre_consensus ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v10 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v11
ef:activity/change/20260822T0600486828500000/256751 altLabel ef:agent/chebi_altlabels ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v11 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v12
ef:activity/change/20260822T0600486828500000/266699 altLabel ef:agent/consensus_match ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v12 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v13
ef:activity/change/20260822T0600486828500000/266700 cas_match_labels ef:agent/consensus_match ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v13 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v14
ef:activity/change/20260822T0600486828500000/278378 properties ef:agent/opsin_iupac ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v14 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v15
ef:activity/change/20260822T0600486828500000/285137 properties ef:agent/rdkit_post_consensus ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v15 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v16
ef:activity/change/20260822T0600486828500000/292967 altLabel ef:agent/dedupe_altlabels ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v16 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v17
ef:activity/change/20260822T0600486828500000/349904 concept_associations ef:agent/carry_associations_onto_flows ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v17 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v18
ef:activity/change/20260822T0600486828500000/392744 properties ef:agent/normalise_property_values ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v18 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v19
ef:activity/change/20260822T0600486828500000/401357 types ef:agent/link_flows_to_their_substance ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v19 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v20
ef:activity/change/20260822T0600486828500000/401358 properties ef:agent/link_flows_to_their_substance ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v20 ef:flow/94193428-2016-40be-b4f2-b28dd15b85aa/v21

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