Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 6 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus, withhold_ambiguous_mass typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'OK 174' (grade code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=benfuracarb||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi', 'pubchem']; cas_sources={'82560-54-1': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-88a85beceefbda1e: {'82560-54-1': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['82560-54-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_3014']; candidate_pubchem_cids=[54886, 14876951, 29922485]; selected_pubchem_cids=[54886]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
11,110 bootstrap_labels prefLabel [{"@value":"benfuracarb","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… Bootstrapped prefLabel from legacy name field
11,111 bootstrap_labels name benfuracarb Purged legacy name field to enforce prefLabel usage
11,112 bootstrap_labels synonyms ["8-Oxa-3-thia-2,4-diazadecanoic acid, 2-methyl-4-(1-methylethyl)-7-oxo-, 2,3-dihydro-2,2-dimethyl-7-benzofuranyl ester… [] Removed legacy synonyms field in favor of structured labels
138,088 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
138,089 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
217,028 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
223,693 normalize_name_case prefLabel [{"@value":"benfuracarb","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… [{"@value":"Benfuracarb","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
237,758 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H30N2O5… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
237,759 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
237,760 enrich_references references [] [{"@id":"beilstein:8347990","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['82560-54-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_3014']; candidate_pubchem_cids=[54886, 14876951, 29922485]; selected_pubchem_cids=[54886]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
251,361 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H30N2O5… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H30N2O5… rdkit_pre_consensus from 'CCOC(=O)CCN(C(C)C)SN(C)C(=O)OC1=CC=CC2=C1OC(C2)(C)C'; added: monoisotopic_mass
255,946 chebi_altlabels altLabel [] [{"@value":"Aminofuracarb","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… Added 3 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
264,061 consensus_match altLabel [{"@value":"Aminofuracarb","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… [{"@value":"Aminofuracarb","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… group_key=benfuracarb||dimension=Environmental > media=Air > strata=Long-term; cas=82560-54-1; added Common Chemistry CAS names as altLabel: Aminosulfulan, Nakar, OK 174, Oncol, Oncol 5G, β-Alanine, <em>N</em>-[[[[(2,3-dihydro-2,2-dimethyl-7-benzofuranyl)oxy]carbonyl]methylamino]thio]-<em>N</em>-(1-methylethyl)-, ethyl ester; object_uuid=fo-88a85beceefbda1e
264,062 consensus_match cas_match_labels {"82560-54-1":"exactMatch"} group_key=benfuracarb||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi', 'pubchem']; cas_sources={'82560-54-1': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-88a85beceefbda1e: {'82560-54-1': 'exactMatch'}
276,555 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H30N2O5… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H30N2O5… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'N-(((((2,3-dihydro-2,2-dimethyl-7-benzofuranyl)oxy)carbonyl)methylamino)thio)-N-(1-methylethyl)-beta-alanine, ethyl ester'
283,169 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H30N2O5… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H30N2O5… rdkit_post_consensus from 'CCOC(=O)CCN(SNCC(=O)Oc1cccc2c1OC(C)(C)C2)C(C)C'; added: inchi2d_key_string; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass
286,971 withhold_ambiguous_mass properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H30N2O5… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H30N2O5… withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it
289,575 strip_catalogue_altlabels altLabel [{"@value":"Aminofuracarb","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… [{"@value":"Aminofuracarb","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… Removed 1 catalogue altLabel value(s): 'OK 174' (grade code)
350,065 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/9496d2af-9a50-… associations resolved on the elementary layer
390,913 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H30N2O5… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H30N2O5… typed the way the ontology types it
398,719 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
398,720 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_33286","rdfs:label":"agrochemical","http://www.w3.org/2004/02/skos/core#d… the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/11110 prefLabel ef:agent/bootstrap_labels ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v0 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v1
ef:activity/change/20260820T0738569779880000/11111 name ef:agent/bootstrap_labels ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v1 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v2
ef:activity/change/20260820T0738569779880000/11112 synonyms ef:agent/bootstrap_labels ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v2 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v3
ef:activity/change/20260820T0738569779880000/138088 context ef:agent/default_context_mapping ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v3 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v4
ef:activity/change/20260820T0738569779880000/138089 context_iri ef:agent/default_context_mapping ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v4 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v5
ef:activity/change/20260820T0738569779880000/217028 unit_iri ef:agent/unit_normalization ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v5 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v6
ef:activity/change/20260820T0738569779880000/223693 prefLabel ef:agent/normalize_name_case ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v6 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v7
ef:activity/change/20260820T0738569779880000/237758 properties ef:agent/enrich_references ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v7 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v8
ef:activity/change/20260820T0738569779880000/237759 skos_definition ef:agent/enrich_references ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v8 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v9
ef:activity/change/20260820T0738569779880000/237760 references ef:agent/enrich_references ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v9 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v10
ef:activity/change/20260820T0738569779880000/251361 properties ef:agent/rdkit_pre_consensus ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v10 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v11
ef:activity/change/20260820T0738569779880000/255946 altLabel ef:agent/chebi_altlabels ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v11 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v12
ef:activity/change/20260820T0738569779880000/264061 altLabel ef:agent/consensus_match ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v12 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v13
ef:activity/change/20260820T0738569779880000/264062 cas_match_labels ef:agent/consensus_match ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v13 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v14
ef:activity/change/20260820T0738569779880000/276555 properties ef:agent/opsin_iupac ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v14 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v15
ef:activity/change/20260820T0738569779880000/283169 properties ef:agent/rdkit_post_consensus ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v15 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v16
ef:activity/change/20260820T0738569779880000/286971 properties ef:agent/withhold_ambiguous_mass ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v16 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v17
ef:activity/change/20260820T0738569779880000/289575 altLabel ef:agent/strip_catalogue_altlabels ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v17 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v18
ef:activity/change/20260820T0738569779880000/350065 concept_associations ef:agent/carry_associations_onto_flows ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v18 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v19
ef:activity/change/20260820T0738569779880000/390913 properties ef:agent/normalise_property_values ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v19 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v20
ef:activity/change/20260820T0738569779880000/398719 types ef:agent/link_flows_to_their_substance ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v20 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v21
ef:activity/change/20260820T0738569779880000/398720 roles ef:agent/link_flows_to_their_substance ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v21 ef:flow/9496d2af-9a50-4f69-84f7-57d842e32591/v22

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