2-aminobutanedioic Acid
Everything that changed this flow. Back to the flow
95b61a42-794c-4c0d-965e-30e6d4a12258
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 4 | chebi_altlabels, consensus_match, strip_catalogue_altlabels, strip_cross_object_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 141379' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=2-aminobutanedioicacid||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'617-45-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-92332e4d64c0b1e8: {'617-45-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['617-45-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_22660']; candidate_pubchem_cids=[424, 5960, 83887, 23443619, 121237803]; selected_pubchem_cids=[424]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 5,972 | bootstrap_labels | prefLabel | — | [{"@value":"2-aminobutanedioic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttri… | Bootstrapped prefLabel from legacy name field |
| 5,973 | bootstrap_labels | name | 2-aminobutanedioic acid | — | Purged legacy name field to enforce prefLabel usage |
| 5,974 | bootstrap_labels | synonyms | ["organic","acidd,l-aspart"] | [] | Removed legacy synonyms field in favor of structured labels |
| 138,752 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","indoor":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 138,753 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 215,334 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,474 | normalize_name_case | prefLabel | [{"@value":"2-aminobutanedioic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttri… | [{"@value":"2-aminobutanedioic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttri… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 232,924 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 232,925 | enrich_references | skos_definition | — | [{"@value":"An α-amino acid that consists of succinic acid bearing a single α-amino substituent","@language":"en","prov… | Merged ChEBI/PubChem definitions into skos:definition |
| 232,926 | enrich_references | references | [] | [{"@id":"gmelin:185140","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"con… | Added references with provenance; cas_numbers=['617-45-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_22660']; candidate_pubchem_cids=[424, 5960, 83887, 23443619, 121237803]; selected_pubchem_cids=[424]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,972 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | rdkit_pre_consensus from 'C(C(C(=O)O)N)C(=O)O'; added: monoisotopic_mass |
| 255,127 | chebi_altlabels | altLabel | [] | [{"@value":"(+-)-Aspartic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 257,425 | strip_cross_object_altlabels | altLabel | [{"@value":"(+-)-Aspartic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"(+-)-Aspartic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | Removed 1 altLabel value(s) that duplicate another flow object's prefLabel: 'Aspartic acid' |
| 260,529 | consensus_match | altLabel | [{"@value":"(+-)-Aspartic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"(+-)-Aspartic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | group_key=2-aminobutanedioicacid||dimension=Environmental > media=Water > water_body=Long-term; cas=617-45-8; added Common Chemistry CAS names as altLabel: (<em>RS</em>)-Aspartic acid, (±)-Aspartic acid, 2-Azaniumyl-4-hydroxy-4-oxobutanoate, <span class="text-smallcaps">DL</span>-Aspartic acid, Aminosuccinic acid, Aspartic acid, Aspartic acid, <span class="text-smallcaps">DL</span>-, NSC 141379; object_uuid=fo-92332e4d64c0b1e8 |
| 260,530 | consensus_match | cas_match_labels | — | {"617-45-8":"exactMatch"} | group_key=2-aminobutanedioicacid||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'617-45-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-92332e4d64c0b1e8: {'617-45-8': 'exactMatch'} |
| 275,102 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '2-aminobutanedioic Acid' |
| 281,599 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | rdkit_post_consensus from 'NC(CC(=O)O)C(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,470 | strip_catalogue_altlabels | altLabel | [{"@value":"(+-)-Aspartic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"(+-)-Aspartic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | Removed 1 catalogue altLabel value(s): 'NSC 141379' (registry code) |
| 350,375 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/95b61a42-794c-… | associations resolved on the elementary layer |
| 389,410 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | typed the way the ontology types it |
| 396,553 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1122181958110000/5972 | prefLabel | ef:agent/bootstrap_labels | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v0 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v1 |
| ef:activity/change/20260821T1122181958110000/5973 | name | ef:agent/bootstrap_labels | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v1 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v2 |
| ef:activity/change/20260821T1122181958110000/5974 | synonyms | ef:agent/bootstrap_labels | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v2 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v3 |
| ef:activity/change/20260821T1122181958110000/138752 | context | ef:agent/default_context_mapping | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v3 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v4 |
| ef:activity/change/20260821T1122181958110000/138753 | context_iri | ef:agent/default_context_mapping | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v4 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v5 |
| ef:activity/change/20260821T1122181958110000/215334 | unit_iri | ef:agent/unit_normalization | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v5 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v6 |
| ef:activity/change/20260821T1122181958110000/222474 | prefLabel | ef:agent/normalize_name_case | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v6 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v7 |
| ef:activity/change/20260821T1122181958110000/232924 | properties | ef:agent/enrich_references | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v7 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v8 |
| ef:activity/change/20260821T1122181958110000/232925 | skos_definition | ef:agent/enrich_references | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v8 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v9 |
| ef:activity/change/20260821T1122181958110000/232926 | references | ef:agent/enrich_references | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v9 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v10 |
| ef:activity/change/20260821T1122181958110000/249972 | properties | ef:agent/rdkit_pre_consensus | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v10 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v11 |
| ef:activity/change/20260821T1122181958110000/255127 | altLabel | ef:agent/chebi_altlabels | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v11 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v12 |
| ef:activity/change/20260821T1122181958110000/257425 | altLabel | ef:agent/strip_cross_object_altlabels | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v12 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v13 |
| ef:activity/change/20260821T1122181958110000/260529 | altLabel | ef:agent/consensus_match | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v13 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v14 |
| ef:activity/change/20260821T1122181958110000/260530 | cas_match_labels | ef:agent/consensus_match | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v14 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v15 |
| ef:activity/change/20260821T1122181958110000/275102 | properties | ef:agent/opsin_iupac | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v15 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v16 |
| ef:activity/change/20260821T1122181958110000/281599 | properties | ef:agent/rdkit_post_consensus | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v16 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v17 |
| ef:activity/change/20260821T1122181958110000/288470 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v17 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v18 |
| ef:activity/change/20260821T1122181958110000/350375 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v18 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v19 |
| ef:activity/change/20260821T1122181958110000/389410 | properties | ef:agent/normalise_property_values | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v19 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v20 |
| ef:activity/change/20260821T1122181958110000/396553 | types | ef:agent/link_flows_to_their_substance | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v20 | ef:flow/95b61a42-794c-4c0d-965e-30e6d4a12258/v21 |