Spectinomycin
Everything that changed this flow. Back to the flow
96b6d02d-f6a0-476a-a686-25b6fff519d2
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'M 141' (grade code), 'U 18409E' (grade code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=spectinomycin||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'1695-77-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-e455553419229c67: {'1695-77-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['1695-77-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_9215']; candidate_pubchem_cids=[2021, 15541, 64769, 64771, 5702260, 117072393, 146157559]; selected_pubchem_cids=[15541]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 4,954 | bootstrap_labels | prefLabel | — | [{"@value":"spectinomycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | Bootstrapped prefLabel from legacy name field |
| 4,955 | bootstrap_labels | name | spectinomycin | — | Purged legacy name field to enforce prefLabel usage |
| 4,956 | bootstrap_labels | synonyms | ["(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)decahydro-4H-pyrano[2,3-b][1,4]benzo… | [] | Removed legacy synonyms field in favor of structured labels |
| 139,334 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 139,335 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 214,994 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,240 | normalize_name_case | prefLabel | [{"@value":"spectinomycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | [{"@value":"Spectinomycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 231,942 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H24N2O7… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 231,943 | enrich_references | skos_definition | — | [{"@value":"A pyranobenzodioxin and antibiotic that is active against gram-negative bacteria and used (as its dihydroch… | Merged ChEBI/PubChem definitions into skos:definition |
| 231,944 | enrich_references | references | [] | [{"@id":"drugcentral:2468","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['1695-77-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_9215']; candidate_pubchem_cids=[2021, 15541, 64769, 64771, 5702260, 117072393, 146157559]; selected_pubchem_cids=[15541]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,685 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H24N2O7… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H24N2O7… | rdkit_pre_consensus from 'CC1CC(=O)C2(C(O1)OC3C(C(C(C(C3O2)NC)O)NC)O)O'; added: inchi2d_string, monoisotopic_mass |
| 255,009 | chebi_altlabels | altLabel | [] | [{"@value":"(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)decahydro-4H-pyrano[2,3-b]… | Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 272,072 | consensus_match | altLabel | [{"@value":"(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)decahydro-4H-pyrano[2,3-b]… | [{"@value":"(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)decahydro-4H-pyrano[2,3-b]… | group_key=spectinomycin||dimension=Environmental > media=Water > water_body=Long-term; cas=1695-77-8; added Common Chemistry CAS names as altLabel: (2<em>R</em>,4a<em>R</em>,5a<em>R</em>,6<em>S</em>,7<em>S</em>,8<em>R</em>,9<em>S</em>,9a<em>R</em>,10a<em>S</em>)-Decahydro-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)-4<em>H</em>-pyrano[2,3-<em>b</em>][1,4]benzodioxin-4-one, 4<em>H</em>-Pyrano[2,3-<em>b</em>][1,4]benzodioxin-4-one, decahydro-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)-, 4<em>H</em>-Pyrano[2,3-<em>b</em>][1,4]benzodioxin-4-one, decahydro-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)-, (2<em>R</em>,4a<em>R</em>,5a<em>R</em>,6<em>S</em>,7<em>S</em>,8<em>R</em>,9<em>S</em>,9a<em>R</em>,10a<em>S</em>)-, 4<em>H</em>-Pyrano[2,3-<em>b</em>][1,4]benzodioxin-4-one, decahydro-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)-, [2<em>R</em>-(2α,4aβ,5aβ,6β,7β,8β,9α,9aα,10aβ)]-, Actinospectacin, M 141, MeSH ID: D000198, Spectacin, Spectam, Togamycin, Trobicin, U 18409E; object_uuid=fo-e455553419229c67 |
| 272,073 | consensus_match | cas_match_labels | — | {"1695-77-8":"exactMatch"} | group_key=spectinomycin||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'1695-77-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-e455553419229c67: {'1695-77-8': 'exactMatch'} |
| 274,820 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H24N2O7… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H24N2O7… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)decahydro-4H-pyrano[2,3-b][1,4]benzodioxin-4-one' |
| 281,291 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H24N2O7… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H24N2O7… | rdkit_post_consensus from 'CN[C@@H]1[C@H](O)[C@H](NC)[C@H]2O[C@@]3(O)C(=O)C[C@@H](C)O[C@H]3O[C@@H]2[C@H]1O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,278 | strip_catalogue_altlabels | altLabel | [{"@value":"(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)decahydro-4H-pyrano[2,3-b]… | [{"@value":"(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)decahydro-4H-pyrano[2,3-b]… | Removed 2 catalogue altLabel value(s): 'M 141' (grade code), 'U 18409E' (grade code) |
| 350,668 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/96b6d02d-f6a0-… | associations resolved on the elementary layer |
| 389,125 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H24N2O7… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H24N2O7… | typed the way the ontology types it |
| 396,149 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 396,150 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H24N2O7… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C14H24N2O7… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/4954 | prefLabel | ef:agent/bootstrap_labels | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v0 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v1 |
| ef:activity/change/20260821T1554374006150000/4955 | name | ef:agent/bootstrap_labels | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v1 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v2 |
| ef:activity/change/20260821T1554374006150000/4956 | synonyms | ef:agent/bootstrap_labels | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v2 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v3 |
| ef:activity/change/20260821T1554374006150000/139334 | context | ef:agent/default_context_mapping | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v3 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v4 |
| ef:activity/change/20260821T1554374006150000/139335 | context_iri | ef:agent/default_context_mapping | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v4 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v5 |
| ef:activity/change/20260821T1554374006150000/214994 | unit_iri | ef:agent/unit_normalization | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v5 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v6 |
| ef:activity/change/20260821T1554374006150000/222240 | prefLabel | ef:agent/normalize_name_case | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v6 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v7 |
| ef:activity/change/20260821T1554374006150000/231942 | properties | ef:agent/enrich_references | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v7 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v8 |
| ef:activity/change/20260821T1554374006150000/231943 | skos_definition | ef:agent/enrich_references | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v8 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v9 |
| ef:activity/change/20260821T1554374006150000/231944 | references | ef:agent/enrich_references | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v9 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v10 |
| ef:activity/change/20260821T1554374006150000/249685 | properties | ef:agent/rdkit_pre_consensus | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v10 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v11 |
| ef:activity/change/20260821T1554374006150000/255009 | altLabel | ef:agent/chebi_altlabels | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v11 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v12 |
| ef:activity/change/20260821T1554374006150000/272072 | altLabel | ef:agent/consensus_match | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v12 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v13 |
| ef:activity/change/20260821T1554374006150000/272073 | cas_match_labels | ef:agent/consensus_match | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v13 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v14 |
| ef:activity/change/20260821T1554374006150000/274820 | properties | ef:agent/opsin_iupac | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v14 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v15 |
| ef:activity/change/20260821T1554374006150000/281291 | properties | ef:agent/rdkit_post_consensus | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v15 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v16 |
| ef:activity/change/20260821T1554374006150000/288278 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v16 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v17 |
| ef:activity/change/20260821T1554374006150000/350668 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v17 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v18 |
| ef:activity/change/20260821T1554374006150000/389125 | properties | ef:agent/normalise_property_values | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v18 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v19 |
| ef:activity/change/20260821T1554374006150000/396149 | types | ef:agent/link_flows_to_their_substance | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v19 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v20 |
| ef:activity/change/20260821T1554374006150000/396150 | properties | ef:agent/link_flows_to_their_substance | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v20 | ef:flow/96b6d02d-f6a0-476a-a686-25b6fff519d2/v21 |