Aspartic Acid
Everything that changed this flow. Back to the flow
98d9c94d-a87c-4df4-98f5-9e3e81dfbf86
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'NSC 3973' (registry code), 'NSC 79553' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=asparticacid||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'56-84-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-4b086445e36ad590: {'56-84-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['56-84-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17053']; candidate_pubchem_cids=[424, 5960, 83887, 5460294]; selected_pubchem_cids=[5960]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 12,408 | bootstrap_labels | prefLabel | — | [{"@value":"aspartic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | Bootstrapped prefLabel from legacy name field |
| 12,409 | bootstrap_labels | name | aspartic acid | — | Purged legacy name field to enforce prefLabel usage |
| 12,410 | bootstrap_labels | synonyms | ["organic","asparticacid","l-asparticacid"] | [] | Removed legacy synonyms field in favor of structured labels |
| 140,570 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 140,571 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 217,445 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,969 | normalize_name_case | prefLabel | [{"@value":"aspartic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | [{"@value":"Aspartic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 238,967 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 238,968 | enrich_references | skos_definition | — | [{"@value":"The L-enantiomer of aspartic acid.","@language":"en","provenance":{"prov:wasGeneratedBy":"enrich_references… | Merged ChEBI/PubChem definitions into skos:definition |
| 238,969 | enrich_references | references | [] | [{"@id":"drugcentral:1550","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['56-84-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17053']; candidate_pubchem_cids=[424, 5960, 83887, 5460294]; selected_pubchem_cids=[5960]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,705 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | rdkit_pre_consensus from 'C(C(C(=O)O)N)C(=O)O'; added: inchi2d_string, monoisotopic_mass |
| 256,083 | chebi_altlabels | altLabel | [] | [{"@value":"(2S)-2-aminobutanedioic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasA… | Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 263,954 | consensus_match | altLabel | [{"@value":"(2S)-2-aminobutanedioic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasA… | [{"@value":"(2S)-2-aminobutanedioic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasA… | group_key=asparticacid||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=56-84-8; added Common Chemistry CAS names as altLabel: (+)-<span class="text-smallcaps">L</span>-Aspartic acid, (+)-Aspartic acid, (<em>S</em>)-Aminobutanedioic acid, (<em>S</em>)-Aspartic acid, 12: PN: WO2023056433 PAGE: 60 claimed sequence, 293: PN: WO2025117649 SEQID: 302 sequence, 387: PN: WO2022056313 SEQID: 393 claimed protein, 391: PN: WO2023172654 SEQID: 393 claimed sequence, 8: PN: CN120157754 SEQID: 189 protein, 8: PN: WO2025124489 SEQID: 189 protein, <span class="text-smallcaps">L</span>-(+)-Aspartic acid, <span class="text-smallcaps">L</span>-Aminosuccinic acid, <span class="text-smallcaps">L</span>-Asparagic acid, <span class="text-smallcaps">L</span>-Asparaginic acid, Asparagic acid, Asparaginic acid, Aspartic acid, <span class="text-smallcaps">L</span>-, Butanedioic acid, amino-, (<em>S</em>)-, H-Asp-OH, MeSH ID: D001224, NSC 3973, NSC 79553; object_uuid=fo-4b086445e36ad590 |
| 263,955 | consensus_match | cas_match_labels | — | {"56-84-8":"exactMatch"} | group_key=asparticacid||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'56-84-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-4b086445e36ad590: {'56-84-8': 'exactMatch'} |
| 276,890 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Aspartic Acid' |
| 283,537 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | rdkit_post_consensus from 'N[C@@H](CC(=O)O)C(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 289,812 | strip_catalogue_altlabels | altLabel | [{"@value":"(2S)-2-aminobutanedioic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasA… | [{"@value":"(2S)-2-aminobutanedioic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasA… | Removed 2 catalogue altLabel value(s): 'NSC 3973' (registry code), 'NSC 79553' (registry code) |
| 351,286 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/98d9c94d-a87c-… | associations resolved on the elementary layer |
| 391,247 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | typed the way the ontology types it |
| 399,191 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 399,192 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H7NO4"],… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/12408 | prefLabel | ef:agent/bootstrap_labels | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v0 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v1 |
| ef:activity/change/20260821T1554374006150000/12409 | name | ef:agent/bootstrap_labels | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v1 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v2 |
| ef:activity/change/20260821T1554374006150000/12410 | synonyms | ef:agent/bootstrap_labels | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v2 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v3 |
| ef:activity/change/20260821T1554374006150000/140570 | context | ef:agent/default_context_mapping | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v3 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v4 |
| ef:activity/change/20260821T1554374006150000/140571 | context_iri | ef:agent/default_context_mapping | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v4 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v5 |
| ef:activity/change/20260821T1554374006150000/217445 | unit_iri | ef:agent/unit_normalization | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v5 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v6 |
| ef:activity/change/20260821T1554374006150000/223969 | prefLabel | ef:agent/normalize_name_case | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v6 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v7 |
| ef:activity/change/20260821T1554374006150000/238967 | properties | ef:agent/enrich_references | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v7 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v8 |
| ef:activity/change/20260821T1554374006150000/238968 | skos_definition | ef:agent/enrich_references | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v8 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v9 |
| ef:activity/change/20260821T1554374006150000/238969 | references | ef:agent/enrich_references | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v9 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v10 |
| ef:activity/change/20260821T1554374006150000/251705 | properties | ef:agent/rdkit_pre_consensus | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v10 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v11 |
| ef:activity/change/20260821T1554374006150000/256083 | altLabel | ef:agent/chebi_altlabels | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v11 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v12 |
| ef:activity/change/20260821T1554374006150000/263954 | altLabel | ef:agent/consensus_match | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v12 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v13 |
| ef:activity/change/20260821T1554374006150000/263955 | cas_match_labels | ef:agent/consensus_match | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v13 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v14 |
| ef:activity/change/20260821T1554374006150000/276890 | properties | ef:agent/opsin_iupac | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v14 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v15 |
| ef:activity/change/20260821T1554374006150000/283537 | properties | ef:agent/rdkit_post_consensus | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v15 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v16 |
| ef:activity/change/20260821T1554374006150000/289812 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v16 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v17 |
| ef:activity/change/20260821T1554374006150000/351286 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v17 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v18 |
| ef:activity/change/20260821T1554374006150000/391247 | properties | ef:agent/normalise_property_values | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v18 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v19 |
| ef:activity/change/20260821T1554374006150000/399191 | types | ef:agent/link_flows_to_their_substance | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v19 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v20 |
| ef:activity/change/20260821T1554374006150000/399192 | properties | ef:agent/link_flows_to_their_substance | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v20 | ef:flow/98d9c94d-a87c-4df4-98f5-9e3e81dfbf86/v21 |