(2s,3r,4s; 5r)-oxane-2,3,4,5-tetrol
Everything that changed this flow. Back to the flow
99b6166e-319d-455a-8879-0cdd0a83d886
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 7 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus, withhold_ambiguous_mass | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| cas_match_labels | 1 | consensus_match | group_key=(2s,3r,4s;5r)-oxane-2,3,4,5-tetrol||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'ec_inventory']; cas_sources={'58-86-6': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-9da2a7fa5a66070e: {'58-86-6': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| prefLabel | 1 | bootstrap_labels | Bootstrapped prefLabel from legacy name field |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['58-86-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15936', 'http://purl.obolibrary.org/obo/CHEBI_53455']; candidate_pubchem_cids=[229, 854, 4536, 6027, 97960, 125409, 135191, 444173, 644160, 12306942, 24802564, 59435876]; selected_pubchem_cids=[644160]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 14,783 | bootstrap_labels | prefLabel | — | [{"@value":"(2s,3r,4s; 5r)-oxane-2,3,4,5-tetrol","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","p… | Bootstrapped prefLabel from legacy name field |
| 14,784 | bootstrap_labels | name | (2s,3r,4s; 5r)-oxane-2,3,4,5-tetrol | — | Purged legacy name field to enforce prefLabel usage |
| 14,785 | bootstrap_labels | synonyms | ["organic","xylose","alfa-xylose(d)","d-xylosect","d-xylosectr","woodsugar","xylosecl","xylose-ul-13c5"] | [] | Removed legacy synonyms field in favor of structured labels |
| 141,116 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Non-agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 141,117 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-noag | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 218,219 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 241,172 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | Added ChEBI/PubChem properties (chebi_ids=2, pubchem_cids=1) |
| 241,173 | enrich_references | skos_definition | — | [{"@value":"D-Xylose in its pyranose form.","@language":"en","provenance":{"prov:wasGeneratedBy":"enrich_references.che… | Merged ChEBI/PubChem definitions into skos:definition |
| 241,174 | enrich_references | references | [] | [{"@id":"beilstein:1562108","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['58-86-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15936', 'http://purl.obolibrary.org/obo/CHEBI_53455']; candidate_pubchem_cids=[229, 854, 4536, 6027, 97960, 125409, 135191, 444173, 644160, 12306942, 24802564, 59435876]; selected_pubchem_cids=[644160]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 252,352 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | rdkit_pre_consensus from 'C(C(C(C(C=O)O)O)O)O'; added: inchi2d_string, monoisotopic_mass |
| 256,363 | chebi_altlabels | altLabel | [] | [{"@value":"(+)-Xylose","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | Added 12 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s) |
| 257,690 | consensus_match | altLabel | [{"@value":"(+)-Xylose","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | [{"@value":"(+)-Xylose","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | group_key=(2s,3r,4s;5r)-oxane-2,3,4,5-tetrol||dimension=Environmental > media=Water > water_body=Ocean; cas=58-86-6; added Common Chemistry CAS names as altLabel: (2<em>R</em>,3<em>S</em>,4<em>R</em>)-2,3,4,5-Tetrahydroxypentanal, Xylose, Xylose, <span class="text-smallcaps">D</span>-; object_uuid=fo-9da2a7fa5a66070e |
| 257,691 | consensus_match | cas_match_labels | — | {"58-86-6":"exactMatch"} | group_key=(2s,3r,4s;5r)-oxane-2,3,4,5-tetrol||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'ec_inventory']; cas_sources={'58-86-6': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-9da2a7fa5a66070e: {'58-86-6': 'exactMatch'} |
| 277,560 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(+)-Xylose' |
| 284,253 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | rdkit_post_consensus from 'O=C[C@H](O)[C@@H](O)[C@H](O)CO'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 287,067 | withhold_ambiguous_mass | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it |
| 292,802 | dedupe_altlabels | altLabel | [{"@value":"(+)-Xylose","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | [{"@value":"(+)-Xylose","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | Deduplicated altLabel values and removed entries matching prefLabel |
| 351,579 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/99b6166e-319d-… | associations resolved on the elementary layer |
| 391,919 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | typed the way the ontology types it |
| 400,154 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 400,155 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H10O5"],… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/14783 | prefLabel | ef:agent/bootstrap_labels | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v0 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v1 |
| ef:activity/change/20260820T1416470405690000/14784 | name | ef:agent/bootstrap_labels | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v1 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v2 |
| ef:activity/change/20260820T1416470405690000/14785 | synonyms | ef:agent/bootstrap_labels | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v2 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v3 |
| ef:activity/change/20260820T1416470405690000/141116 | context | ef:agent/default_context_mapping | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v3 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v4 |
| ef:activity/change/20260820T1416470405690000/141117 | context_iri | ef:agent/default_context_mapping | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v4 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v5 |
| ef:activity/change/20260820T1416470405690000/218219 | unit_iri | ef:agent/unit_normalization | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v5 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v6 |
| ef:activity/change/20260820T1416470405690000/241172 | properties | ef:agent/enrich_references | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v6 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v7 |
| ef:activity/change/20260820T1416470405690000/241173 | skos_definition | ef:agent/enrich_references | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v7 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v8 |
| ef:activity/change/20260820T1416470405690000/241174 | references | ef:agent/enrich_references | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v8 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v9 |
| ef:activity/change/20260820T1416470405690000/252352 | properties | ef:agent/rdkit_pre_consensus | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v9 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v10 |
| ef:activity/change/20260820T1416470405690000/256363 | altLabel | ef:agent/chebi_altlabels | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v10 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v11 |
| ef:activity/change/20260820T1416470405690000/257690 | altLabel | ef:agent/consensus_match | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v11 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v12 |
| ef:activity/change/20260820T1416470405690000/257691 | cas_match_labels | ef:agent/consensus_match | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v12 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v13 |
| ef:activity/change/20260820T1416470405690000/277560 | properties | ef:agent/opsin_iupac | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v13 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v14 |
| ef:activity/change/20260820T1416470405690000/284253 | properties | ef:agent/rdkit_post_consensus | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v14 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v15 |
| ef:activity/change/20260820T1416470405690000/287067 | properties | ef:agent/withhold_ambiguous_mass | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v15 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v16 |
| ef:activity/change/20260820T1416470405690000/292802 | altLabel | ef:agent/dedupe_altlabels | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v16 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v17 |
| ef:activity/change/20260820T1416470405690000/351579 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v17 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v18 |
| ef:activity/change/20260820T1416470405690000/391919 | properties | ef:agent/normalise_property_values | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v18 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v19 |
| ef:activity/change/20260820T1416470405690000/400154 | types | ef:agent/link_flows_to_their_substance | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v19 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v20 |
| ef:activity/change/20260820T1416470405690000/400155 | properties | ef:agent/link_flows_to_their_substance | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v20 | ef:flow/99b6166e-319d-455a-8879-0cdd0a83d886/v21 |