Tetracycline
Everything that changed this flow. Back to the flow
9b58820d-d88f-4988-867d-6dd86341679d
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 7 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus, withhold_ambiguous_mass | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 108579' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=tetracycline||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'60-54-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-3f744e595d8908b4: {'60-54-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['60-54-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_27902']; candidate_pubchem_cids=[11987855, 54675776, 54677640, 54679287, 54681983, 54685734, 54699147, 73169869]; selected_pubchem_cids=[54675776]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 21,538 | bootstrap_labels | prefLabel | — | [{"@value":"tetracycline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | Bootstrapped prefLabel from legacy name field |
| 21,539 | bootstrap_labels | name | tetracycline | — | Purged legacy name field to enforce prefLabel usage |
| 21,556 | bootstrap_labels | synonyms | ["(-)-Tetrahcycline hydrochloride","(2E,6S,12aS)-2-[amino(hydroxy)methylidene]-4-(dimethylamino)-6,10,11,12a-tetrahydro… | [] | Removed legacy synonyms field in favor of structured labels |
| 142,210 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| 142,211 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| 220,243 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,960 | normalize_name_case | prefLabel | [{"@value":"tetracycline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | [{"@value":"Tetracycline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 246,833 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 246,834 | enrich_references | skos_definition | — | [{"@value":"A broad-spectrum polyketide antibiotic produced by the Streptomyces genus of actinobacteria.","@language":"… | Merged ChEBI/PubChem definitions into skos:definition |
| 246,835 | enrich_references | references | [] | [{"@id":"drugcentral:2611","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['60-54-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_27902']; candidate_pubchem_cids=[11987855, 54675776, 54677640, 54679287, 54681983, 54685734, 54699147, 73169869]; selected_pubchem_cids=[54675776]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,990 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | rdkit_pre_consensus from 'CC1(C2CC3C(C(=O)C(=C(C3(C(=O)C2=C(C4=C1C=CC=C4O)O)O)O)C(=O)N)N(C)C)O'; added: inchi2d_string, monoisotopic_mass |
| 257,092 | chebi_altlabels | altLabel | [] | [{"@value":"(4S,4aS,5aS,12aS)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11… | Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 272,373 | consensus_match | altLabel | [{"@value":"(4S,4aS,5aS,12aS)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11… | [{"@value":"(4S,4aS,5aS,12aS)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11… | group_key=tetracycline||dimension=Environmental > media=Air > indoor=Unknown; cas=60-54-8; added Common Chemistry CAS names as altLabel: (-)-Tetracycline, (4<em>S</em>,4a<em>S</em>,5a<em>S</em>,6<em>S</em>,12a<em>S</em>)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-2-naphthacenecarboxamide, 2-Naphthacenecarboxamide, 4-(dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-, 2-Naphthacenecarboxamide, 4-(dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-, (4<em>S</em>,4a<em>S</em>,5a<em>S</em>,6<em>S</em>,12a<em>S</em>)-, 2-Naphthacenecarboxamide, 4-(dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-, [4<em>S</em>-(4α,4aα,5aα,6β,12aα)]-, Achromycin (naphthacene derivative), Acromicina, Actisite, Agromicina, Akne-Pyodron, Akne-Pyodron Kur, Ambramicina, Ambramycin, Apo-Tetra, Arcanacycline, Bio-Tetra, Biocycline, Britaciclina, Calociclina, Ciclibion, Cyclomycin, Cytome, Dispatetrin, Economycin, Enterocycline, Florocycline, Gammatet, Ibicyn, Kinciclina, Latycin, Limecycline, MeSH ID: D013752, Medocycline, Mericycline, Micycline, NSC 108579, Neocycline, NorTet, Novo-Tetra, Nu-Tetra, Omegamycin, Orlycycline, Panmycin, Polycycline, Polycycline (antibiotic), Quimocyclin N, Quimpe Antibiotico, Resteclin, Retet, Robitet Robicaps, Roviciclina, Sagittacin N, Servitet, Spaciclina, Steclin V, Sumycin syrup, Tetra Hubber, Tetra-Co, Tetra-Proter, Tetrabioptal, Tetracap, Tetracitro S, Tetradecin, Tetrafil, Tetrafosammina, Tetralan, Tetralen, Tetramig, Tetramykoin, Tetraseptine, Triphacycline, Veracin, Vetacyclinum; object_uuid=fo-3f744e595d8908b4 |
| 272,374 | consensus_match | cas_match_labels | — | {"60-54-8":"exactMatch"} | group_key=tetracycline||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'60-54-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-3f744e595d8908b4: {'60-54-8': 'exactMatch'} |
| 279,182 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(4S,4aS,5aS,6S,12aS)-4-(dimethylamino)-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide' |
| 286,038 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | rdkit_post_consensus from 'CN(C)[C@@H]1C(O)=C(C(N)=O)C(=O)[C@@]2(O)C(O)=C3C(=O)c4c(O)cccc4[C@@](C)(O)[C@H]3C[C@@H]12'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 287,210 | withhold_ambiguous_mass | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it |
| 291,477 | strip_catalogue_altlabels | altLabel | [{"@value":"(4S,4aS,5aS,12aS)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11… | [{"@value":"(4S,4aS,5aS,12aS)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11… | Removed 1 catalogue altLabel value(s): 'NSC 108579' (registry code) |
| 352,107 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/9b58820d-d88f-… | associations resolved on the elementary layer |
| 393,567 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | typed the way the ontology types it |
| 402,632 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 402,633 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1302361922970000/21538 | prefLabel | ef:agent/bootstrap_labels | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v0 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v1 |
| ef:activity/change/20260821T1302361922970000/21539 | name | ef:agent/bootstrap_labels | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v1 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v2 |
| ef:activity/change/20260821T1302361922970000/21556 | synonyms | ef:agent/bootstrap_labels | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v2 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v3 |
| ef:activity/change/20260821T1302361922970000/142210 | context | ef:agent/default_context_mapping | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v3 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v4 |
| ef:activity/change/20260821T1302361922970000/142211 | context_iri | ef:agent/default_context_mapping | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v4 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v5 |
| ef:activity/change/20260821T1302361922970000/220243 | unit_iri | ef:agent/unit_normalization | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v5 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v6 |
| ef:activity/change/20260821T1302361922970000/225960 | prefLabel | ef:agent/normalize_name_case | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v6 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v7 |
| ef:activity/change/20260821T1302361922970000/246833 | properties | ef:agent/enrich_references | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v7 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v8 |
| ef:activity/change/20260821T1302361922970000/246834 | skos_definition | ef:agent/enrich_references | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v8 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v9 |
| ef:activity/change/20260821T1302361922970000/246835 | references | ef:agent/enrich_references | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v9 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v10 |
| ef:activity/change/20260821T1302361922970000/253990 | properties | ef:agent/rdkit_pre_consensus | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v10 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v11 |
| ef:activity/change/20260821T1302361922970000/257092 | altLabel | ef:agent/chebi_altlabels | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v11 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v12 |
| ef:activity/change/20260821T1302361922970000/272373 | altLabel | ef:agent/consensus_match | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v12 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v13 |
| ef:activity/change/20260821T1302361922970000/272374 | cas_match_labels | ef:agent/consensus_match | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v13 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v14 |
| ef:activity/change/20260821T1302361922970000/279182 | properties | ef:agent/opsin_iupac | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v14 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v15 |
| ef:activity/change/20260821T1302361922970000/286038 | properties | ef:agent/rdkit_post_consensus | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v15 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v16 |
| ef:activity/change/20260821T1302361922970000/287210 | properties | ef:agent/withhold_ambiguous_mass | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v16 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v17 |
| ef:activity/change/20260821T1302361922970000/291477 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v17 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v18 |
| ef:activity/change/20260821T1302361922970000/352107 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v18 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v19 |
| ef:activity/change/20260821T1302361922970000/393567 | properties | ef:agent/normalise_property_values | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v19 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v20 |
| ef:activity/change/20260821T1302361922970000/402632 | types | ef:agent/link_flows_to_their_substance | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v20 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v21 |
| ef:activity/change/20260821T1302361922970000/402633 | properties | ef:agent/link_flows_to_their_substance | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v21 | ef:flow/9b58820d-d88f-4988-867d-6dd86341679d/v22 |