Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 4 catalogue altLabel value(s): 'KIH 2023' (grade code), 'KIH-2023' (grade code), 'KUH 911' (grade code), 'V 10029' (grade code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=bispyribac-sodium||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'125401-92-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-96635d5d9f7b5df6: {'125401-92-5': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['125401-92-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_81757']; candidate_pubchem_cids=[443031, 23682789, 45357799, 53297382]; selected_pubchem_cids=[23682789]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

20
# Step Field From To Why
8,563 bootstrap_labels prefLabel [{"@value":"bispyribac-sodium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedT… Bootstrapped prefLabel from legacy name field
8,564 bootstrap_labels name bispyribac-sodium Purged legacy name field to enforce prefLabel usage
143,894 default_context_mapping context {"dimension":"Environmental","media":"Air","indoor":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
143,895 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
216,194 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
223,118 normalize_name_case prefLabel [{"@value":"bispyribac-sodium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedT… [{"@value":"Bispyribac-sodium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedT… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
235,369 enrich_references properties {} {"https://w3id.org/chemrof/smiles_string":{"@id":"https://w3id.org/chemrof/smiles_string","@value":["COC1=CC(=NC(=N1)OC… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
235,370 enrich_references skos_definition [{"@value":"The organic sodium salt of bispyribac. It is used as a broad spectrum post-emergent herbicide for the contr… Merged ChEBI/PubChem definitions into skos:definition
235,371 enrich_references references [] [{"@id":"agr:IND44263842","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"c… Added references with provenance; cas_numbers=['125401-92-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_81757']; candidate_pubchem_cids=[443031, 23682789, 45357799, 53297382]; selected_pubchem_cids=[23682789]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
250,678 rdkit_pre_consensus properties {"https://w3id.org/chemrof/smiles_string":{"@id":"https://w3id.org/chemrof/smiles_string","@value":["COC1=CC(=NC(=N1)OC… {"https://w3id.org/chemrof/smiles_string":{"@id":"https://w3id.org/chemrof/smiles_string","@value":["COC1=CC(=NC(=N1)OC… rdkit_pre_consensus from 'COC1=CC(=NC(=N1)OC2=C(C(=CC=C2)OC3=NC(=CC(=N3)OC)OC)C(=O)[O-])OC.[Na+]'; added: molecular_mass, monoisotopic_mass
255,590 chebi_altlabels altLabel [] [{"@value":"Adora","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… Added 10 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
264,432 consensus_match altLabel [{"@value":"Adora","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… [{"@value":"Adora","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… group_key=bispyribac-sodium||dimension=Environmental > media=Ground > geography=Unknown; cas=125401-92-5; added Common Chemistry CAS names as altLabel: Benzoic acid, 2,6-bis[(4,6-dimethoxy-2-pyrimidinyl)oxy]-, sodium salt, Benzoic acid, 2,6-bis[(4,6-dimethoxy-2-pyrimidinyl)oxy]-, sodium salt (1:1), Designee, KIH 2023, Nominee, Nominee 400SC, Nominee KZ, Regiment, Short-keep; object_uuid=fo-96635d5d9f7b5df6
264,433 consensus_match cas_match_labels {"125401-92-5":"exactMatch"} group_key=bispyribac-sodium||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'125401-92-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-96635d5d9f7b5df6: {'125401-92-5': 'exactMatch'}
275,856 opsin_iupac properties {"https://w3id.org/chemrof/smiles_string":{"@id":"https://w3id.org/chemrof/smiles_string","@value":["COC1=CC(=NC(=N1)OC… {"https://w3id.org/chemrof/smiles_string":{"@id":"https://w3id.org/chemrof/smiles_string","rdfs:label":"SMILES","@value… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'sodium 2,6-bis(4,6-dimethoxy-2-pyrimidinyloxy)benzoate'
282,417 rdkit_post_consensus properties {"https://w3id.org/chemrof/smiles_string":{"@id":"https://w3id.org/chemrof/smiles_string","rdfs:label":"SMILES","@value… {"https://w3id.org/chemrof/smiles_string":{"@id":"https://w3id.org/chemrof/smiles_string","rdfs:label":"SMILES","@value… rdkit_post_consensus from 'COc1cc(OC)nc(Oc2cccc(Oc3nc(OC)cc(OC)n3)c2C(=O)[O-])n1.[Na+]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
289,044 strip_catalogue_altlabels altLabel [{"@value":"Adora","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… [{"@value":"Adora","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… Removed 4 catalogue altLabel value(s): 'KIH 2023' (grade code), 'KIH-2023' (grade code), 'KUH 911' (grade code), 'V 10029' (grade code)
352,969 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/9e3fb9b2-21cc-… associations resolved on the elementary layer
390,201 normalise_property_values properties {"https://w3id.org/chemrof/smiles_string":{"@id":"https://w3id.org/chemrof/smiles_string","rdfs:label":"SMILES","@value… {"https://w3id.org/chemrof/smiles_string":{"@id":"https://w3id.org/chemrof/smiles_string","rdfs:label":"SMILES","@value… typed the way the ontology types it
397,707 link_flows_to_their_substance types ["https://w3id.org/chemrof/ChemicalSalt"] the substance's answer, copied onto its flow
397,708 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_33286","rdfs:label":"agrochemical","http://www.w3.org/2004/02/skos/core#d… the substance's answer, copied onto its flow

PROV-O trail

20 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T1416470405690000/8563 prefLabel ef:agent/bootstrap_labels ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v0 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v1
ef:activity/change/20260820T1416470405690000/8564 name ef:agent/bootstrap_labels ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v1 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v2
ef:activity/change/20260820T1416470405690000/143894 context ef:agent/default_context_mapping ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v2 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v3
ef:activity/change/20260820T1416470405690000/143895 context_iri ef:agent/default_context_mapping ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v3 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v4
ef:activity/change/20260820T1416470405690000/216194 unit_iri ef:agent/unit_normalization ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v4 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v5
ef:activity/change/20260820T1416470405690000/223118 prefLabel ef:agent/normalize_name_case ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v5 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v6
ef:activity/change/20260820T1416470405690000/235369 properties ef:agent/enrich_references ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v6 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v7
ef:activity/change/20260820T1416470405690000/235370 skos_definition ef:agent/enrich_references ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v7 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v8
ef:activity/change/20260820T1416470405690000/235371 references ef:agent/enrich_references ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v8 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v9
ef:activity/change/20260820T1416470405690000/250678 properties ef:agent/rdkit_pre_consensus ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v9 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v10
ef:activity/change/20260820T1416470405690000/255590 altLabel ef:agent/chebi_altlabels ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v10 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v11
ef:activity/change/20260820T1416470405690000/264432 altLabel ef:agent/consensus_match ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v11 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v12
ef:activity/change/20260820T1416470405690000/264433 cas_match_labels ef:agent/consensus_match ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v12 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v13
ef:activity/change/20260820T1416470405690000/275856 properties ef:agent/opsin_iupac ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v13 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v14
ef:activity/change/20260820T1416470405690000/282417 properties ef:agent/rdkit_post_consensus ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v14 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v15
ef:activity/change/20260820T1416470405690000/289044 altLabel ef:agent/strip_catalogue_altlabels ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v15 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v16
ef:activity/change/20260820T1416470405690000/352969 concept_associations ef:agent/carry_associations_onto_flows ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v16 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v17
ef:activity/change/20260820T1416470405690000/390201 properties ef:agent/normalise_property_values ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v17 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v18
ef:activity/change/20260820T1416470405690000/397707 types ef:agent/link_flows_to_their_substance ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v18 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v19
ef:activity/change/20260820T1416470405690000/397708 roles ef:agent/link_flows_to_their_substance ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v19 ef:flow/9e3fb9b2-21cc-4f68-938f-159046a665a7/v20

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