Cadaverine
Everything that changed this flow. Back to the flow
9e465fa9-cb4c-4acf-af3c-59b8373fded7
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 4 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | cas=462-94-2; cc_chebi_agreed_name='Cadaverine'; object_uuid=fo-682955dc4e193060 |
| cas_match_labels | 1 | consensus_match | group_key=pentane-1,5-diamine||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'462-94-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-682955dc4e193060: {'462-94-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['462-94-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_18127']; candidate_pubchem_cids=[273, 7245, 77956, 3718401]; selected_pubchem_cids=[273]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 10,268 | bootstrap_labels | prefLabel | — | [{"@value":"pentane-1,5-diamine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribute… | Bootstrapped prefLabel from legacy name field |
| 10,269 | bootstrap_labels | name | pentane-1,5-diamine | — | Purged legacy name field to enforce prefLabel usage |
| 10,270 | bootstrap_labels | synonyms | ["organic","pentamethylenediamine"] | [] | Removed legacy synonyms field in favor of structured labels |
| 143,908 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Ground level","population_density":"Urban (>1000 people/square mil… | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 143,909 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-grle-ur10pesq | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 216,746 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,495 | normalize_name_case | prefLabel | [{"@value":"pentane-1,5-diamine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribute… | [{"@value":"Pentane-1,5-diamine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribute… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 236,968 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H14N2"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 236,969 | enrich_references | skos_definition | — | [{"@value":"An alkane-α,ω-diamine comprising a straight-chain pentane core with amino substitutents at positions 1 and… | Merged ChEBI/PubChem definitions into skos:definition |
| 236,970 | enrich_references | references | [] | [{"@id":"gmelin:2310","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['462-94-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_18127']; candidate_pubchem_cids=[273, 7245, 77956, 3718401]; selected_pubchem_cids=[273]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,127 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H14N2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H14N2"],… | rdkit_pre_consensus from 'C(CCN)CCN'; added: monoisotopic_mass |
| 255,839 | chebi_altlabels | altLabel | [] | [{"@value":"1,5-Diaminopentane","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | Added 6 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 270,460 | consensus_match | prefLabel | [{"@value":"Pentane-1,5-diamine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribute… | [{"@value":"Cadaverine","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"cons… | cas=462-94-2; cc_chebi_agreed_name='Cadaverine'; object_uuid=fo-682955dc4e193060 |
| 270,461 | consensus_match | altLabel | [{"@value":"1,5-Diaminopentane","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"1,5-Diaminopentane","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | cas=462-94-2; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-682955dc4e193060 |
| 270,462 | consensus_match | altLabel | [{"@value":"1,5-Diaminopentane","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"1,5-Diaminopentane","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | group_key=pentane-1,5-diamine||dimension=Environmental > media=Air > strata=Long-term; cas=462-94-2; added Common Chemistry CAS names as altLabel: 1,5-Amylene diamine, 1,5-Diamino-<em>n</em>-pentane, MeSH ID: D002103, α,ω-Pentanediamine; object_uuid=fo-682955dc4e193060 |
| 270,463 | consensus_match | cas_match_labels | — | {"462-94-2":"exactMatch"} | group_key=pentane-1,5-diamine||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'462-94-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-682955dc4e193060: {'462-94-2': 'exactMatch'} |
| 276,312 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H14N2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H14N2"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Cadaverine' |
| 282,905 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H14N2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H14N2"],… | rdkit_post_consensus from 'NCCCCCN'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,503 | dedupe_altlabels | altLabel | [{"@value":"1,5-Diaminopentane","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"1,5-Diaminopentane","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | Deduplicated altLabel values and removed entries matching prefLabel |
| 352,956 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/9e465fa9-cb4c-… | associations resolved on the elementary layer |
| 390,659 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H14N2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H14N2"],… | typed the way the ontology types it |
| 398,371 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/10268 | prefLabel | ef:agent/bootstrap_labels | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v0 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v1 |
| ef:activity/change/20260821T1554374006150000/10269 | name | ef:agent/bootstrap_labels | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v1 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v2 |
| ef:activity/change/20260821T1554374006150000/10270 | synonyms | ef:agent/bootstrap_labels | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v2 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v3 |
| ef:activity/change/20260821T1554374006150000/143908 | context | ef:agent/default_context_mapping | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v3 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v4 |
| ef:activity/change/20260821T1554374006150000/143909 | context_iri | ef:agent/default_context_mapping | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v4 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v5 |
| ef:activity/change/20260821T1554374006150000/216746 | unit_iri | ef:agent/unit_normalization | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v5 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v6 |
| ef:activity/change/20260821T1554374006150000/223495 | prefLabel | ef:agent/normalize_name_case | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v6 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v7 |
| ef:activity/change/20260821T1554374006150000/236968 | properties | ef:agent/enrich_references | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v7 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v8 |
| ef:activity/change/20260821T1554374006150000/236969 | skos_definition | ef:agent/enrich_references | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v8 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v9 |
| ef:activity/change/20260821T1554374006150000/236970 | references | ef:agent/enrich_references | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v9 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v10 |
| ef:activity/change/20260821T1554374006150000/251127 | properties | ef:agent/rdkit_pre_consensus | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v10 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v11 |
| ef:activity/change/20260821T1554374006150000/255839 | altLabel | ef:agent/chebi_altlabels | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v11 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v12 |
| ef:activity/change/20260821T1554374006150000/270460 | prefLabel | ef:agent/consensus_match | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v12 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v13 |
| ef:activity/change/20260821T1554374006150000/270461 | altLabel | ef:agent/consensus_match | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v13 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v14 |
| ef:activity/change/20260821T1554374006150000/270462 | altLabel | ef:agent/consensus_match | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v14 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v15 |
| ef:activity/change/20260821T1554374006150000/270463 | cas_match_labels | ef:agent/consensus_match | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v15 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v16 |
| ef:activity/change/20260821T1554374006150000/276312 | properties | ef:agent/opsin_iupac | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v16 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v17 |
| ef:activity/change/20260821T1554374006150000/282905 | properties | ef:agent/rdkit_post_consensus | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v17 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v18 |
| ef:activity/change/20260821T1554374006150000/292503 | altLabel | ef:agent/dedupe_altlabels | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v18 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v19 |
| ef:activity/change/20260821T1554374006150000/352956 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v19 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v20 |
| ef:activity/change/20260821T1554374006150000/390659 | properties | ef:agent/normalise_property_values | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v20 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v21 |
| ef:activity/change/20260821T1554374006150000/398371 | types | ef:agent/link_flows_to_their_substance | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v21 | ef:flow/9e465fa9-cb4c-4acf-af3c-59b8373fded7/v22 |