Formate
Everything that changed this flow. Back to the flow
a1533bda-9f08-40e1-a1a3-996e7635a7af
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 1 | chebi_altlabels | Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| cas_match_labels | 1 | consensus_match | group_key=formate||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi']; cas_sources={'71-47-6': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-70632a5b2a4b0c58: {'71-47-6': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| prefLabel | 1 | bootstrap_labels | Bootstrapped prefLabel from legacy name field |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['71-47-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15740']; candidate_pubchem_cids=[]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
17| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 22,026 | bootstrap_labels | prefLabel | — | [{"@value":"Formate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Bootstrapped prefLabel from legacy name field |
| 22,027 | bootstrap_labels | name | Formate | — | Purged legacy name field to enforce prefLabel usage |
| 22,028 | bootstrap_labels | synonyms | ["formate ion","methanoate ion"] | [] | Removed legacy synonyms field in favor of structured labels |
| 145,736 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| 145,737 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| 220,378 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 247,215 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO2"],"at… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=0) |
| 247,216 | enrich_references | skos_definition | — | [{"@value":"A monocarboxylic acid anion that is the conjugate base of formic acid. Induces severe metabolic acidosis an… | Merged ChEBI/PubChem definitions into skos:definition |
| 247,217 | enrich_references | references | [] | [{"@id":"gmelin:1006","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['71-47-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15740']; candidate_pubchem_cids=[]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 254,096 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO2"],"at… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO2","CHO… | rdkit_pre_consensus from '[H]C(=O)[O-]'; added: molecular_formula, monoisotopic_mass |
| 257,166 | chebi_altlabels | altLabel | [] | [{"@value":"HCO2 anion","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"cons… | Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 267,283 | consensus_match | cas_match_labels | — | {"71-47-6":"exactMatch"} | group_key=formate||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi']; cas_sources={'71-47-6': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-70632a5b2a4b0c58: {'71-47-6': 'exactMatch'} |
| 279,299 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO2","CHO… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO2","CHO… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Formate' |
| 286,168 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO2","CHO… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO2","CHO… | rdkit_post_consensus from 'O=C[O-]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 353,870 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/a1533bda-9f08-… | associations resolved on the elementary layer |
| 393,690 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO2","CHO… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO2","CHO… | typed the way the ontology types it |
| 402,825 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/MolecularAnion"] | the substance's answer, copied onto its flow |
PROV-O trail
17 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/22026 | prefLabel | ef:agent/bootstrap_labels | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v0 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v1 |
| ef:activity/change/20260822T0600486828500000/22027 | name | ef:agent/bootstrap_labels | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v1 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v2 |
| ef:activity/change/20260822T0600486828500000/22028 | synonyms | ef:agent/bootstrap_labels | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v2 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v3 |
| ef:activity/change/20260822T0600486828500000/145736 | context | ef:agent/default_context_mapping | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v3 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v4 |
| ef:activity/change/20260822T0600486828500000/145737 | context_iri | ef:agent/default_context_mapping | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v4 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v5 |
| ef:activity/change/20260822T0600486828500000/220378 | unit_iri | ef:agent/unit_normalization | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v5 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v6 |
| ef:activity/change/20260822T0600486828500000/247215 | properties | ef:agent/enrich_references | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v6 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v7 |
| ef:activity/change/20260822T0600486828500000/247216 | skos_definition | ef:agent/enrich_references | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v7 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v8 |
| ef:activity/change/20260822T0600486828500000/247217 | references | ef:agent/enrich_references | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v8 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v9 |
| ef:activity/change/20260822T0600486828500000/254096 | properties | ef:agent/rdkit_pre_consensus | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v9 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v10 |
| ef:activity/change/20260822T0600486828500000/257166 | altLabel | ef:agent/chebi_altlabels | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v10 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v11 |
| ef:activity/change/20260822T0600486828500000/267283 | cas_match_labels | ef:agent/consensus_match | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v11 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v12 |
| ef:activity/change/20260822T0600486828500000/279299 | properties | ef:agent/opsin_iupac | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v12 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v13 |
| ef:activity/change/20260822T0600486828500000/286168 | properties | ef:agent/rdkit_post_consensus | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v13 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v14 |
| ef:activity/change/20260822T0600486828500000/353870 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v14 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v15 |
| ef:activity/change/20260822T0600486828500000/393690 | properties | ef:agent/normalise_property_values | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v15 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v16 |
| ef:activity/change/20260822T0600486828500000/402825 | types | ef:agent/link_flows_to_their_substance | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v16 | ef:flow/a1533bda-9f08-40e1-a1a3-996e7635a7af/v17 |