Codeine
Everything that changed this flow. Back to the flow
a2eaad3e-f27d-4de0-b681-b17e61f7e5ff
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=codeine||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'76-57-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-c3500f7f71f7b68f: {'76-57-3': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['76-57-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16714']; candidate_pubchem_cids=[2828, 5836, 6312, 5284371, 11865406, 12303754, 126969213]; selected_pubchem_cids=[5284371]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 11,173 | bootstrap_labels | prefLabel | — | [{"@value":"codeine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Bootstrapped prefLabel from legacy name field |
| 11,174 | bootstrap_labels | name | codeine | — | Purged legacy name field to enforce prefLabel usage |
| 11,175 | bootstrap_labels | synonyms | ["organic","codeine"] | [] | Removed legacy synonyms field in favor of structured labels |
| 146,786 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Surface water"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 146,787 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-suwa | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 217,043 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,700 | normalize_name_case | prefLabel | [{"@value":"codeine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Codeine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 237,811 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C18H21NO3"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 237,812 | enrich_references | skos_definition | — | [{"@value":"A morphinane alkaloid found in the opium poppy, Papaver somniferum var. album; has analgesic, anti-tussive… | Merged ChEBI/PubChem definitions into skos:definition |
| 237,813 | enrich_references | references | [] | [{"@id":"beilstein:5303198","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['76-57-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16714']; candidate_pubchem_cids=[2828, 5836, 6312, 5284371, 11865406, 12303754, 126969213]; selected_pubchem_cids=[5284371]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,371 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C18H21NO3"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C18H21NO3"… | rdkit_pre_consensus from 'CN1CCC23C4C1CC5=C2C(=C(C=C5)OC)OC3C(C=C4)O'; added: inchi2d_string, monoisotopic_mass |
| 255,945 | chebi_altlabels | altLabel | [] | [{"@value":"(-)-Codeine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | Added 16 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 265,275 | consensus_match | altLabel | [{"@value":"(-)-Codeine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | [{"@value":"(-)-Codeine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | group_key=codeine||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); cas=76-57-3; added Common Chemistry CAS names as altLabel: (5α,6α)-7,8-Didehydro-4,5-epoxy-3-methoxy-17-methylmorphinan-6-ol, 3-Methylmorphine, <em>O</em><sup>3</sup>-Methylmorphine, Kodelak fito, MeSH ID: D003061, Morphinan-6-ol, 7,8-didehydro-4,5-epoxy-3-methoxy-17-methyl-, (5α,6α)-, Morphinan-6α-ol, 7,8-didehydro-4,5α-epoxy-3-methoxy-17-methyl-, Mytussin; object_uuid=fo-c3500f7f71f7b68f |
| 265,276 | consensus_match | cas_match_labels | — | {"76-57-3":"exactMatch"} | group_key=codeine||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'76-57-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-c3500f7f71f7b68f: {'76-57-3': 'exactMatch'} |
| 276,551 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C18H21NO3"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C18H21NO3"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Codeine' |
| 283,167 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C18H21NO3"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C18H21NO3"… | rdkit_post_consensus from 'COc1ccc2c3c1O[C@H]1[C@@H](O)C=C[C@H]4[C@@H](C2)N(C)CC[C@@]341'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,558 | dedupe_altlabels | altLabel | [{"@value":"(-)-Codeine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | [{"@value":"(-)-Codeine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… | Deduplicated altLabel values and removed entries matching prefLabel |
| 354,415 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/a2eaad3e-f27d-… | associations resolved on the elementary layer |
| 390,907 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C18H21NO3"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C18H21NO3"… | typed the way the ontology types it |
| 398,719 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 398,720 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_78298","rdfs:label":"environmental contaminant","http://www.w3.org/2004/0… | the substance's answer, copied onto its flow |
| 398,721 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C18H21NO3"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C18H21NO3"… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/11173 | prefLabel | ef:agent/bootstrap_labels | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v0 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v1 |
| ef:activity/change/20260822T0600486828500000/11174 | name | ef:agent/bootstrap_labels | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v1 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v2 |
| ef:activity/change/20260822T0600486828500000/11175 | synonyms | ef:agent/bootstrap_labels | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v2 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v3 |
| ef:activity/change/20260822T0600486828500000/146786 | context | ef:agent/default_context_mapping | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v3 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v4 |
| ef:activity/change/20260822T0600486828500000/146787 | context_iri | ef:agent/default_context_mapping | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v4 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v5 |
| ef:activity/change/20260822T0600486828500000/217043 | unit_iri | ef:agent/unit_normalization | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v5 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v6 |
| ef:activity/change/20260822T0600486828500000/223700 | prefLabel | ef:agent/normalize_name_case | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v6 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v7 |
| ef:activity/change/20260822T0600486828500000/237811 | properties | ef:agent/enrich_references | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v7 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v8 |
| ef:activity/change/20260822T0600486828500000/237812 | skos_definition | ef:agent/enrich_references | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v8 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v9 |
| ef:activity/change/20260822T0600486828500000/237813 | references | ef:agent/enrich_references | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v9 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v10 |
| ef:activity/change/20260822T0600486828500000/251371 | properties | ef:agent/rdkit_pre_consensus | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v10 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v11 |
| ef:activity/change/20260822T0600486828500000/255945 | altLabel | ef:agent/chebi_altlabels | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v11 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v12 |
| ef:activity/change/20260822T0600486828500000/265275 | altLabel | ef:agent/consensus_match | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v12 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v13 |
| ef:activity/change/20260822T0600486828500000/265276 | cas_match_labels | ef:agent/consensus_match | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v13 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v14 |
| ef:activity/change/20260822T0600486828500000/276551 | properties | ef:agent/opsin_iupac | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v14 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v15 |
| ef:activity/change/20260822T0600486828500000/283167 | properties | ef:agent/rdkit_post_consensus | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v15 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v16 |
| ef:activity/change/20260822T0600486828500000/292558 | altLabel | ef:agent/dedupe_altlabels | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v16 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v17 |
| ef:activity/change/20260822T0600486828500000/354415 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v17 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v18 |
| ef:activity/change/20260822T0600486828500000/390907 | properties | ef:agent/normalise_property_values | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v18 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v19 |
| ef:activity/change/20260822T0600486828500000/398719 | types | ef:agent/link_flows_to_their_substance | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v19 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v20 |
| ef:activity/change/20260822T0600486828500000/398720 | roles | ef:agent/link_flows_to_their_substance | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v20 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v21 |
| ef:activity/change/20260822T0600486828500000/398721 | properties | ef:agent/link_flows_to_their_substance | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v21 | ef:flow/a2eaad3e-f27d-4de0-b681-b17e61f7e5ff/v22 |