Aflatoxin
Everything that changed this flow. Back to the flow
a3e07225-3a7b-4fb5-93ab-57aaa7373f77
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 3 | normalise_property_values, opsin_iupac, rdkit_post_consensus | typed the way the ontology types it |
| altLabel | 2 | chebi_altlabels, consensus_match | group_key=aflatoxin||dimension=Environmental > media=Air > strata=Long-term; cas=1402-68-2; added Common Chemistry CAS names as altLabel: Aflatoxins, Flavatoxins, MeSH ID: D000348, Toxins, afla; object_uuid=fo-872658e03820c9da |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=aflatoxin||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi']; cas_sources={'1402-68-2': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-872658e03820c9da: {'1402-68-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['1402-68-2']; matched_chebi_ids=[]; candidate_pubchem_cids=[14403, 14421]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
17| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 12,963 | bootstrap_labels | prefLabel | — | [{"@value":"aflatoxin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 12,964 | bootstrap_labels | name | aflatoxin | — | Purged legacy name field to enforce prefLabel usage |
| 12,965 | bootstrap_labels | synonyms | ["(6aR,9aS)-4-methoxy-2,3,6a,9a-tetrahydrocyclopenta[c]furo[3',2':4,5]furo[2,3-h]chromene-1,11-dione","2,3,6a,9a-tetrah… | [] | Removed legacy synonyms field in favor of structured labels |
| 147,360 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 147,361 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 217,626 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 224,094 | normalize_name_case | prefLabel | [{"@value":"aflatoxin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Aflatoxin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 239,481 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 239,482 | enrich_references | references | [] | [{"@id":"https://commonchemistry.cas.org/detail?cas_rn=1402-68-2","provenance":{"prov:wasGeneratedBy":"enrich_reference… | Added references with provenance; cas_numbers=['1402-68-2']; matched_chebi_ids=[]; candidate_pubchem_cids=[14403, 14421]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 256,155 | chebi_altlabels | altLabel | [] | [{"@value":"11-methoxy-6,8,16,20-tetraoxapentacyclo[10.8.0.02,9.03,7.013,18]icosa-1,4,9,11,13(18)-pentaene-17,19-dione"… | Added 1 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 263,575 | consensus_match | altLabel | [{"@value":"11-methoxy-6,8,16,20-tetraoxapentacyclo[10.8.0.02,9.03,7.013,18]icosa-1,4,9,11,13(18)-pentaene-17,19-dione"… | [{"@value":"11-methoxy-6,8,16,20-tetraoxapentacyclo[10.8.0.02,9.03,7.013,18]icosa-1,4,9,11,13(18)-pentaene-17,19-dione"… | group_key=aflatoxin||dimension=Environmental > media=Air > strata=Long-term; cas=1402-68-2; added Common Chemistry CAS names as altLabel: Aflatoxins, Flavatoxins, MeSH ID: D000348, Toxins, afla; object_uuid=fo-872658e03820c9da |
| 263,576 | consensus_match | cas_match_labels | — | {"1402-68-2":"exactMatch"} | group_key=aflatoxin||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi']; cas_sources={'1402-68-2': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-872658e03820c9da: {'1402-68-2': 'exactMatch'} |
| 277,047 | opsin_iupac | properties | {} | {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '11-methoxy-6,8,16,20-tetraoxapentacyclo[10.8.0.02,9.03,7.013,18]icosa-1,4,9,11,13(18)-pentaene-17,19-dione' |
| 283,699 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… | {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… | rdkit_post_consensus from 'COc1cc2c(c3oc(=O)c4c(c13)CCOC4=O)C1C=COC1O2'; added: inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass; confirmed: smiles_string, inchi2d_string |
| 354,702 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/a3e07225-3a7b-… | associations resolved on the elementary layer |
| 391,397 | normalise_property_values | properties | {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… | {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… | typed the way the ontology types it |
| 399,411 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
17 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/12963 | prefLabel | ef:agent/bootstrap_labels | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v0 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v1 |
| ef:activity/change/20260821T1554374006150000/12964 | name | ef:agent/bootstrap_labels | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v1 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v2 |
| ef:activity/change/20260821T1554374006150000/12965 | synonyms | ef:agent/bootstrap_labels | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v2 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v3 |
| ef:activity/change/20260821T1554374006150000/147360 | context | ef:agent/default_context_mapping | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v3 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v4 |
| ef:activity/change/20260821T1554374006150000/147361 | context_iri | ef:agent/default_context_mapping | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v4 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v5 |
| ef:activity/change/20260821T1554374006150000/217626 | unit_iri | ef:agent/unit_normalization | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v5 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v6 |
| ef:activity/change/20260821T1554374006150000/224094 | prefLabel | ef:agent/normalize_name_case | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v6 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v7 |
| ef:activity/change/20260821T1554374006150000/239481 | skos_definition | ef:agent/enrich_references | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v7 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v8 |
| ef:activity/change/20260821T1554374006150000/239482 | references | ef:agent/enrich_references | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v8 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v9 |
| ef:activity/change/20260821T1554374006150000/256155 | altLabel | ef:agent/chebi_altlabels | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v9 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v10 |
| ef:activity/change/20260821T1554374006150000/263575 | altLabel | ef:agent/consensus_match | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v10 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v11 |
| ef:activity/change/20260821T1554374006150000/263576 | cas_match_labels | ef:agent/consensus_match | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v11 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v12 |
| ef:activity/change/20260821T1554374006150000/277047 | properties | ef:agent/opsin_iupac | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v12 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v13 |
| ef:activity/change/20260821T1554374006150000/283699 | properties | ef:agent/rdkit_post_consensus | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v13 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v14 |
| ef:activity/change/20260821T1554374006150000/354702 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v14 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v15 |
| ef:activity/change/20260821T1554374006150000/391397 | properties | ef:agent/normalise_property_values | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v15 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v16 |
| ef:activity/change/20260821T1554374006150000/399411 | types | ef:agent/link_flows_to_their_substance | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v16 | ef:flow/a3e07225-3a7b-4fb5-93ab-57aaa7373f77/v17 |