Urbacid
Everything that changed this flow. Back to the flow
a70c1a32-d963-4d56-ac64-d193bb955804
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 4 | enrich_references, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 2 | consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=urbacid||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['pubchem']; cas_sources={'2445-07-0': ['pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d0d38500a019feef: {'2445-07-0': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['2445-07-0']; matched_chebi_ids=[]; candidate_pubchem_cids=[17128]; selected_pubchem_cids=[17128]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
18| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 1,603 | bootstrap_labels | prefLabel | — | [{"@value":"urbacid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Bootstrapped prefLabel from legacy name field |
| 1,604 | bootstrap_labels | name | urbacid | — | Purged legacy name field to enforce prefLabel usage |
| 1,605 | bootstrap_labels | synonyms | ["AC1L29DB","Bis(dimethylthiocarbamoylthio)methyl-arsine","Carbamic acid, dimethyldithio-, bis(anhydrosulfide) with dit… | [] | Removed legacy synonyms field in favor of structured labels |
| 149,130 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 149,131 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 213,878 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 221,467 | normalize_name_case | prefLabel | [{"@value":"urbacid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Urbacid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 228,730 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15AsN2S… | Added ChEBI/PubChem properties (chebi_ids=0, pubchem_cids=1) |
| 228,731 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 228,732 | enrich_references | references | [] | [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J21.065J","provenance":{"prov:wasGeneratedBy":"enrich_referenc… | Added references with provenance; cas_numbers=['2445-07-0']; matched_chebi_ids=[]; candidate_pubchem_cids=[17128]; selected_pubchem_cids=[17128]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 248,768 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15AsN2S… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15AsN2S… | rdkit_pre_consensus from 'CN(C)C(=S)S[As](C)SC(=S)N(C)C'; added: molecular_mass, monoisotopic_mass |
| 273,219 | consensus_match | altLabel | [] | [{"@value":"Bis(dimethylthiocarbamylthio)methyl arsine","@language":"en","source":{"prov:wasGeneratedBy":"consensus_mat… | group_key=urbacid||dimension=Environmental > media=Water > water_body=Long-term; cas=2445-07-0; added Common Chemistry CAS names as altLabel: Bis(dimethylthiocarbamylthio)methyl arsine, Carbamic acid, dimethyldithio-, bis(anhydrosulfide) with dithiomethanearsonous acid, Carbamodithioic acid, <em>N</em>,<em>N</em>-dimethyl-, <em>C</em>,<em>C</em>′-bis(anhydrosulfide) with <em>As</em>-methylarsonodithious acid, Carbamodithioic acid, dimethyl-, bis(anhydrosulfide) with methylarsonodithious acid, Methyl arsine-bis(dimethyldithiocarbamate), Methylbis(dimethylthiocarbamoylthio)arsine, Urbacide; object_uuid=fo-d0d38500a019feef |
| 273,220 | consensus_match | cas_match_labels | — | {"2445-07-0":"exactMatch"} | group_key=urbacid||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['pubchem']; cas_sources={'2445-07-0': ['pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d0d38500a019feef: {'2445-07-0': 'exactMatch'} |
| 280,298 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15AsN2S… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15AsN2S… | rdkit_post_consensus from 'CN(C)C(=S)S[As](C)SC(=S)N(C)C'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,068 | dedupe_altlabels | altLabel | [{"@value":"Bis(dimethylthiocarbamylthio)methyl arsine","@language":"en","source":{"prov:wasGeneratedBy":"consensus_mat… | [{"@value":"Bis(dimethylthiocarbamylthio)methyl arsine","@language":"en","source":{"prov:wasGeneratedBy":"consensus_mat… | Deduplicated altLabel values and removed entries matching prefLabel |
| 355,609 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/a70c1a32-d963-… | associations resolved on the elementary layer |
| 388,196 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15AsN2S… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H15AsN2S… | typed the way the ontology types it |
| 394,820 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
18 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1555490862250000/1603 | prefLabel | ef:agent/bootstrap_labels | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v0 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v1 |
| ef:activity/change/20260820T1555490862250000/1604 | name | ef:agent/bootstrap_labels | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v1 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v2 |
| ef:activity/change/20260820T1555490862250000/1605 | synonyms | ef:agent/bootstrap_labels | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v2 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v3 |
| ef:activity/change/20260820T1555490862250000/149130 | context | ef:agent/default_context_mapping | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v3 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v4 |
| ef:activity/change/20260820T1555490862250000/149131 | context_iri | ef:agent/default_context_mapping | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v4 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v5 |
| ef:activity/change/20260820T1555490862250000/213878 | unit_iri | ef:agent/unit_normalization | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v5 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v6 |
| ef:activity/change/20260820T1555490862250000/221467 | prefLabel | ef:agent/normalize_name_case | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v6 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v7 |
| ef:activity/change/20260820T1555490862250000/228730 | properties | ef:agent/enrich_references | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v7 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v8 |
| ef:activity/change/20260820T1555490862250000/228731 | skos_definition | ef:agent/enrich_references | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v8 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v9 |
| ef:activity/change/20260820T1555490862250000/228732 | references | ef:agent/enrich_references | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v9 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v10 |
| ef:activity/change/20260820T1555490862250000/248768 | properties | ef:agent/rdkit_pre_consensus | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v10 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v11 |
| ef:activity/change/20260820T1555490862250000/273219 | altLabel | ef:agent/consensus_match | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v11 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v12 |
| ef:activity/change/20260820T1555490862250000/273220 | cas_match_labels | ef:agent/consensus_match | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v12 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v13 |
| ef:activity/change/20260820T1555490862250000/280298 | properties | ef:agent/rdkit_post_consensus | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v13 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v14 |
| ef:activity/change/20260820T1555490862250000/292068 | altLabel | ef:agent/dedupe_altlabels | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v14 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v15 |
| ef:activity/change/20260820T1555490862250000/355609 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v15 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v16 |
| ef:activity/change/20260820T1555490862250000/388196 | properties | ef:agent/normalise_property_values | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v16 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v17 |
| ef:activity/change/20260820T1555490862250000/394820 | types | ef:agent/link_flows_to_their_substance | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v17 | ef:flow/a70c1a32-d963-4d56-ac64-d193bb955804/v18 |