Omeprazole
Everything that changed this flow. Back to the flow
a7f5c948-c3b7-4a40-bde1-3f85a967071c
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=omeprazole||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'73590-58-6': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d2d0ed66ffdce2e6: {'73590-58-6': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['73590-58-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_77260', 'http://purl.obolibrary.org/obo/CHEBI_7772']; candidate_pubchem_cids=[3334, 4594, 9568614, 9579578]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 14,351 | bootstrap_labels | prefLabel | — | [{"@value":"omeprazole","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Bootstrapped prefLabel from legacy name field |
| 14,352 | bootstrap_labels | name | omeprazole | — | Purged legacy name field to enforce prefLabel usage |
| 19,192 | bootstrap_labels | synonyms | ["1h-benzimidazole,6-methoxy-2-[[(4-methoxy-3,5-dimethyl-2-pyridinyl)methyl]sulfinyl]-othernames5-methoxy-2-[[(4-methox… | [] | Removed legacy synonyms field in favor of structured labels |
| 149,696 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 149,697 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-aicrhe | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 218,078 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 224,412 | normalize_name_case | prefLabel | [{"@value":"omeprazole","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | [{"@value":"Omeprazole","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 240,770 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19N3O3… | Added ChEBI/PubChem properties (chebi_ids=2, pubchem_cids=0) |
| 240,771 | enrich_references | skos_definition | — | [{"@value":"A member of the class of benzimidazoles that is 1H-benzimidazole which is substituted by a [4-methoxy-3,5-d… | Merged ChEBI/PubChem definitions into skos:definition |
| 240,772 | enrich_references | references | [] | [{"@id":"https://commonchemistry.cas.org/detail?cas_rn=73590-58-6","provenance":{"prov:wasGeneratedBy":"enrich_referenc… | Added references with provenance; cas_numbers=['73590-58-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_77260', 'http://purl.obolibrary.org/obo/CHEBI_7772']; candidate_pubchem_cids=[3334, 4594, 9568614, 9579578]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 252,228 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19N3O3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19N3O3… | rdkit_pre_consensus from 'InChI=1S/C17H19N3O3S/c1-10-8-18-15(11(2)16(10)23-4)9-24(21)17-19-13-6-5-12(22-3)7-14(13)20-17/h5-8H,9H2,1-4H3,(H,19,20)'; added: smiles_string, monoisotopic_mass |
| 256,306 | chebi_altlabels | altLabel | [] | [{"@value":"5-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole","@language":"en","sour… | Added 29 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s) |
| 270,183 | consensus_match | altLabel | [{"@value":"5-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole","@language":"en","sour… | [{"@value":"5-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole","@language":"en","sour… | group_key=omeprazole||dimension=Environmental > media=Ground > geography=Unknown; cas=73590-58-6; added Common Chemistry CAS names as altLabel: (±)-Omeprazole, 1<em>H</em>-Benzimidazole, 5-methoxy-2-[[(4-methoxy-3,5-dimethyl-2-pyridinyl)methyl]sulfinyl]-, 1<em>H</em>-Benzimidazole, 6-methoxy-2-[[(4-methoxy-3,5-dimethyl-2-pyridinyl)methyl]sulfinyl]-, 2-[[(3,5-Dimethyl-4-methoxy-2-pyridyl)methyl]sulfinyl]-5-methoxy-1<em>H</em>-benzimidazole, 5-Methoxy-2-[[(4-methoxy-3,5-dimethyl-2-pyridinyl)methyl]sulfinyl]-1<em>H</em>-benzimidazole, 5-Methoxy-2-[[(4-methoxy-3,5-dimethyl-2-pyridyl)methyl]sulfinyl]-1<em>H</em>-benzimidazole, 6-Methoxy-2-[[(4-methoxy-3,5-dimethyl-2-pyridinyl)methyl]sulfinyl]-1<em>H</em>-benzimidazole, Acidex, Antra MUPS, Aulcer, Dizprazol, Dudencer, Emilok, Epirazole, Equiprazole, GastroGard, Gastroguard, Gastroloc, Gastrozole, Gibancer, H 168/68, Inhipump, Logastric, Lomac, MeSH ID: D009853, Megazole, Mepral, Miol, Miracid, Mopral, Ocid, Omebeta 20, Omed, Omedar, Omelac, Omepradex, Omepral, Omeprazen, Omeprazole-Towa, Omeprazon, Omepril, Omeprol, Omerap, Omezol, Omezzol, Omid, Omisec, Omizac, Ompanyt, Oprax, Opraz, Ovulanze, Ozoken, Parizac, Pepticum, Peptilcer, Petprazol 20, Prilosec, Prysma, RS-omeprazole, Ramezol, Roweprazol, Secrepina, Ulcometion, Ulcozol, Ulsen, Ulzone, Zefxon, Zegerid, Zimor, Zoltum; object_uuid=fo-d2d0ed66ffdce2e6 |
| 270,184 | consensus_match | cas_match_labels | — | {"73590-58-6":"exactMatch"} | group_key=omeprazole||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'73590-58-6': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d2d0ed66ffdce2e6: {'73590-58-6': 'exactMatch'} |
| 277,423 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19N3O3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19N3O3… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '5-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole' |
| 284,107 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19N3O3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19N3O3… | rdkit_post_consensus from 'COc1ccc2[nH]c(S(=O)Cc3ncc(C)c(OC)c3C)nc2c1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,757 | dedupe_altlabels | altLabel | [{"@value":"5-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole","@language":"en","sour… | [{"@value":"5-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole","@language":"en","sour… | Deduplicated altLabel values and removed entries matching prefLabel |
| 355,870 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/a7f5c948-c3b7-… | associations resolved on the elementary layer |
| 391,777 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19N3O3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C17H19N3O3… | typed the way the ontology types it |
| 399,963 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/14351 | prefLabel | ef:agent/bootstrap_labels | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v0 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v1 |
| ef:activity/change/20260822T0600486828500000/14352 | name | ef:agent/bootstrap_labels | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v1 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v2 |
| ef:activity/change/20260822T0600486828500000/19192 | synonyms | ef:agent/bootstrap_labels | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v2 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v3 |
| ef:activity/change/20260822T0600486828500000/149696 | context | ef:agent/default_context_mapping | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v3 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v4 |
| ef:activity/change/20260822T0600486828500000/149697 | context_iri | ef:agent/default_context_mapping | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v4 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v5 |
| ef:activity/change/20260822T0600486828500000/218078 | unit_iri | ef:agent/unit_normalization | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v5 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v6 |
| ef:activity/change/20260822T0600486828500000/224412 | prefLabel | ef:agent/normalize_name_case | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v6 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v7 |
| ef:activity/change/20260822T0600486828500000/240770 | properties | ef:agent/enrich_references | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v7 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v8 |
| ef:activity/change/20260822T0600486828500000/240771 | skos_definition | ef:agent/enrich_references | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v8 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v9 |
| ef:activity/change/20260822T0600486828500000/240772 | references | ef:agent/enrich_references | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v9 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v10 |
| ef:activity/change/20260822T0600486828500000/252228 | properties | ef:agent/rdkit_pre_consensus | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v10 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v11 |
| ef:activity/change/20260822T0600486828500000/256306 | altLabel | ef:agent/chebi_altlabels | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v11 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v12 |
| ef:activity/change/20260822T0600486828500000/270183 | altLabel | ef:agent/consensus_match | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v12 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v13 |
| ef:activity/change/20260822T0600486828500000/270184 | cas_match_labels | ef:agent/consensus_match | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v13 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v14 |
| ef:activity/change/20260822T0600486828500000/277423 | properties | ef:agent/opsin_iupac | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v14 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v15 |
| ef:activity/change/20260822T0600486828500000/284107 | properties | ef:agent/rdkit_post_consensus | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v15 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v16 |
| ef:activity/change/20260822T0600486828500000/292757 | altLabel | ef:agent/dedupe_altlabels | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v16 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v17 |
| ef:activity/change/20260822T0600486828500000/355870 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v17 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v18 |
| ef:activity/change/20260822T0600486828500000/391777 | properties | ef:agent/normalise_property_values | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v18 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v19 |
| ef:activity/change/20260822T0600486828500000/399963 | types | ef:agent/link_flows_to_their_substance | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v19 | ef:flow/a7f5c948-c3b7-4a40-bde1-3f85a967071c/v20 |