Iodomethane
Everything that changed this flow. Back to the flow
a852e0a6-32ec-46b0-b2f6-8ab4e35119f7
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 9366' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=iodomethane||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'74-88-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-522fb92c3aab5085: {'74-88-4': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['74-88-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_39282']; candidate_pubchem_cids=[6328, 15337, 245846]; selected_pubchem_cids=[6328]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 4,804 | bootstrap_labels | prefLabel | — | [{"@value":"iodomethane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Bootstrapped prefLabel from legacy name field |
| 4,805 | bootstrap_labels | name | iodomethane | — | Purged legacy name field to enforce prefLabel usage |
| 4,806 | bootstrap_labels | synonyms | ["organic","iodomethane","methyliodide"] | [] | Removed legacy synonyms field in favor of structured labels |
| 149,920 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","indoor":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 149,921 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 214,950 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,205 | normalize_name_case | prefLabel | [{"@value":"iodomethane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Iodomethane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 231,807 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3I"],"at… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 231,808 | enrich_references | skos_definition | — | [{"@value":"A member of the class of iodomethanes that is methane in which one of the hydrogens is replaced by iodine."… | Merged ChEBI/PubChem definitions into skos:definition |
| 231,809 | enrich_references | references | [] | [{"@id":"gmelin:1233","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['74-88-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_39282']; candidate_pubchem_cids=[6328, 15337, 245846]; selected_pubchem_cids=[6328]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,652 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3I"],"at… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3I"],"at… | rdkit_pre_consensus from 'CI'; added: monoisotopic_mass |
| 254,995 | chebi_altlabels | altLabel | [] | [{"@value":"CH3I","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 268,006 | consensus_match | altLabel | [{"@value":"CH3I","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"CH3I","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | group_key=iodomethane||dimension=Environmental > media=Ground > geography=Non-agricultural; cas=74-88-4; added Common Chemistry CAS names as altLabel: Ioguard, Methane, iodo-, Methyl iodide (CH<sub>3</sub>I), Methyliodide, NSC 9366; object_uuid=fo-522fb92c3aab5085 |
| 268,007 | consensus_match | cas_match_labels | — | {"74-88-4":"exactMatch"} | group_key=iodomethane||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'74-88-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-522fb92c3aab5085: {'74-88-4': 'exactMatch'} |
| 274,798 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3I"],"at… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3I"],"at… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Iodomethane' |
| 281,264 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3I"],"at… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3I"],"at… | rdkit_post_consensus from 'CI'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,263 | strip_catalogue_altlabels | altLabel | [{"@value":"CH3I","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"CH3I","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Removed 1 catalogue altLabel value(s): 'NSC 9366' (registry code) |
| 356,002 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/a852e0a6-32ec-… | associations resolved on the elementary layer |
| 389,108 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3I"],"at… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3I"],"at… | typed the way the ontology types it |
| 396,113 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 396,114 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_24852","rdfs:label":"insecticide","http://www.w3.org/2004/02/skos/core#de… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/4804 | prefLabel | ef:agent/bootstrap_labels | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v0 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v1 |
| ef:activity/change/20260820T1416470405690000/4805 | name | ef:agent/bootstrap_labels | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v1 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v2 |
| ef:activity/change/20260820T1416470405690000/4806 | synonyms | ef:agent/bootstrap_labels | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v2 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v3 |
| ef:activity/change/20260820T1416470405690000/149920 | context | ef:agent/default_context_mapping | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v3 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v4 |
| ef:activity/change/20260820T1416470405690000/149921 | context_iri | ef:agent/default_context_mapping | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v4 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v5 |
| ef:activity/change/20260820T1416470405690000/214950 | unit_iri | ef:agent/unit_normalization | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v5 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v6 |
| ef:activity/change/20260820T1416470405690000/222205 | prefLabel | ef:agent/normalize_name_case | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v6 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v7 |
| ef:activity/change/20260820T1416470405690000/231807 | properties | ef:agent/enrich_references | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v7 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v8 |
| ef:activity/change/20260820T1416470405690000/231808 | skos_definition | ef:agent/enrich_references | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v8 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v9 |
| ef:activity/change/20260820T1416470405690000/231809 | references | ef:agent/enrich_references | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v9 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v10 |
| ef:activity/change/20260820T1416470405690000/249652 | properties | ef:agent/rdkit_pre_consensus | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v10 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v11 |
| ef:activity/change/20260820T1416470405690000/254995 | altLabel | ef:agent/chebi_altlabels | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v11 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v12 |
| ef:activity/change/20260820T1416470405690000/268006 | altLabel | ef:agent/consensus_match | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v12 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v13 |
| ef:activity/change/20260820T1416470405690000/268007 | cas_match_labels | ef:agent/consensus_match | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v13 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v14 |
| ef:activity/change/20260820T1416470405690000/274798 | properties | ef:agent/opsin_iupac | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v14 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v15 |
| ef:activity/change/20260820T1416470405690000/281264 | properties | ef:agent/rdkit_post_consensus | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v15 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v16 |
| ef:activity/change/20260820T1416470405690000/288263 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v16 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v17 |
| ef:activity/change/20260820T1416470405690000/356002 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v17 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v18 |
| ef:activity/change/20260820T1416470405690000/389108 | properties | ef:agent/normalise_property_values | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v18 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v19 |
| ef:activity/change/20260820T1416470405690000/396113 | types | ef:agent/link_flows_to_their_substance | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v19 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v20 |
| ef:activity/change/20260820T1416470405690000/396114 | roles | ef:agent/link_flows_to_their_substance | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v20 | ef:flow/a852e0a6-32ec-46b0-b2f6-8ab4e35119f7/v21 |