L-cysteine
Everything that changed this flow. Back to the flow
ab495393-7137-45f4-8553-bfa532a48739
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 3 catalogue altLabel value(s): 'E 920' (grade code), 'E-920' (grade code), 'NSC 8746' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=l-cysteine||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'52-90-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-2dc3467428288c09: {'52-90-4': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['52-90-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17561']; candidate_pubchem_cids=[594, 5862, 92851, 6419722]; selected_pubchem_cids=[5862]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 15,922 | bootstrap_labels | prefLabel | — | [{"@value":"l-cysteine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"bri… | Bootstrapped prefLabel from legacy name field |
| 15,923 | bootstrap_labels | name | l-cysteine | — | Purged legacy name field to enforce prefLabel usage |
| 15,924 | bootstrap_labels | synonyms | ["l-cysteine","(2r)-2-amino-3-mercaptopropanoicacid","(2r)-2-amino-3-sulfanylpropanoicacid","(r)-2-amino-3-mercaptoprop… | [] | Removed legacy synonyms field in favor of structured labels |
| 151,687 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 151,688 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-aicrhe | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 218,574 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 224,756 | normalize_name_case | prefLabel | [{"@value":"l-cysteine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"bri… | [{"@value":"L-cysteine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"bri… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 242,177 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2S"]… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 242,178 | enrich_references | skos_definition | — | [{"@value":"An optically active form of cysteine having L-configuration.","@language":"en","provenance":{"prov:wasGener… | Merged ChEBI/PubChem definitions into skos:definition |
| 242,179 | enrich_references | references | [] | [{"@id":"drugcentral:769","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"b… | Added references with provenance; cas_numbers=['52-90-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17561']; candidate_pubchem_cids=[594, 5862, 92851, 6419722]; selected_pubchem_cids=[5862]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 252,646 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2S"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2S"]… | rdkit_pre_consensus from 'C(C(C(=O)O)N)S'; added: inchi2d_string, monoisotopic_mass |
| 256,499 | chebi_altlabels | altLabel | [] | [{"@value":"(2R)-2-amino-3-mercaptopropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | Added 13 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 268,291 | consensus_match | altLabel | [{"@value":"(2R)-2-amino-3-mercaptopropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | [{"@value":"(2R)-2-amino-3-mercaptopropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | group_key=l-cysteine||dimension=Environmental > media=Air > indoor=Unknown; cas=52-90-4; added Common Chemistry CAS names as altLabel: (<em>R</em>)-2-Amino-3-sulfanylpropanoic acid, (<em>R</em>)-Cysteine, 11: PN: WO2021055880 SEQID: 12 claimed protein, 1: PN: WO2022258499 SEQID: 1 claimed sequence, 2-Amino-3-mercaptopropanoic acid, 2-Amino-3-mercaptopropionic acid, 518: PN: WO2022056313 SEQID: 534 claimed protein, <span class="text-smallcaps">L</span>-(+)-Cysteine, <span class="text-smallcaps">L</span>-Alanine, 3-mercapto-, <span class="text-smallcaps">L</span>-Cys, Cystein, Cysteine, <span class="text-smallcaps">L</span>-, Half-cystine, MeSH ID: D003545, NSC 8746, Propanoic acid, 2-amino-3-mercapto-, (<em>R</em>)-, Thioserine, β-Mercaptoalanine; object_uuid=fo-2dc3467428288c09 |
| 268,292 | consensus_match | cas_match_labels | — | {"52-90-4":"exactMatch"} | group_key=l-cysteine||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'52-90-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-2dc3467428288c09: {'52-90-4': 'exactMatch'} |
| 277,853 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2S"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2S"]… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'L-cysteine' |
| 284,561 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2S"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2S"]… | rdkit_post_consensus from 'N[C@@H](CS)C(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,515 | strip_catalogue_altlabels | altLabel | [{"@value":"(2R)-2-amino-3-mercaptopropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | [{"@value":"(2R)-2-amino-3-mercaptopropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | Removed 3 catalogue altLabel value(s): 'E 920' (grade code), 'E-920' (grade code), 'NSC 8746' (registry code) |
| 356,899 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/ab495393-7137-… | associations resolved on the elementary layer |
| 392,235 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2S"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2S"]… | typed the way the ontology types it |
| 400,580 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 400,581 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2S"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO2S"]… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20261019T0712047113160000/15922 | prefLabel | ef:agent/bootstrap_labels | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v0 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v1 |
| ef:activity/change/20261019T0712047113160000/15923 | name | ef:agent/bootstrap_labels | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v1 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v2 |
| ef:activity/change/20261019T0712047113160000/15924 | synonyms | ef:agent/bootstrap_labels | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v2 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v3 |
| ef:activity/change/20261019T0712047113160000/151687 | context | ef:agent/default_context_mapping | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v3 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v4 |
| ef:activity/change/20261019T0712047113160000/151688 | context_iri | ef:agent/default_context_mapping | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v4 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v5 |
| ef:activity/change/20261019T0712047113160000/218574 | unit_iri | ef:agent/unit_normalization | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v5 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v6 |
| ef:activity/change/20261019T0712047113160000/224756 | prefLabel | ef:agent/normalize_name_case | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v6 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v7 |
| ef:activity/change/20261019T0712047113160000/242177 | properties | ef:agent/enrich_references | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v7 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v8 |
| ef:activity/change/20261019T0712047113160000/242178 | skos_definition | ef:agent/enrich_references | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v8 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v9 |
| ef:activity/change/20261019T0712047113160000/242179 | references | ef:agent/enrich_references | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v9 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v10 |
| ef:activity/change/20261019T0712047113160000/252646 | properties | ef:agent/rdkit_pre_consensus | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v10 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v11 |
| ef:activity/change/20261019T0712047113160000/256499 | altLabel | ef:agent/chebi_altlabels | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v11 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v12 |
| ef:activity/change/20261019T0712047113160000/268291 | altLabel | ef:agent/consensus_match | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v12 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v13 |
| ef:activity/change/20261019T0712047113160000/268292 | cas_match_labels | ef:agent/consensus_match | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v13 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v14 |
| ef:activity/change/20261019T0712047113160000/277853 | properties | ef:agent/opsin_iupac | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v14 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v15 |
| ef:activity/change/20261019T0712047113160000/284561 | properties | ef:agent/rdkit_post_consensus | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v15 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v16 |
| ef:activity/change/20261019T0712047113160000/290515 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v16 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v17 |
| ef:activity/change/20261019T0712047113160000/356899 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v17 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v18 |
| ef:activity/change/20261019T0712047113160000/392235 | properties | ef:agent/normalise_property_values | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v18 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v19 |
| ef:activity/change/20261019T0712047113160000/400580 | types | ef:agent/link_flows_to_their_substance | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v19 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v20 |
| ef:activity/change/20261019T0712047113160000/400581 | properties | ef:agent/link_flows_to_their_substance | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v20 | ef:flow/ab495393-7137-45f4-8553-bfa532a48739/v21 |