Biphenyl
Everything that changed this flow. Back to the flow
acf734ac-0f6d-4e1c-a41a-c0507e80ba99
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 4 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 14916' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=biphenyl||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'92-52-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-8185587174959dd7: {'92-52-4': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['92-52-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17097']; candidate_pubchem_cids=[7095, 13229, 15322, 243676]; selected_pubchem_cids=[7095]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 22,613 | bootstrap_labels | prefLabel | — | [{"@value":"biphenyl","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | Bootstrapped prefLabel from legacy name field |
| 22,614 | bootstrap_labels | name | biphenyl | — | Purged legacy name field to enforce prefLabel usage |
| 24,755 | bootstrap_labels | synonyms | ["biphenyl","diphenyl","1,1'-biphenyl","biphenyl, 1,1-","1,1 -biphenyl","1,1’-biphenyl","biphenyl (1,1'-biphenyl) (1,1-… | [] | Removed legacy synonyms field in favor of structured labels |
| 152,760 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","indoor":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 152,761 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 220,511 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 226,181 | normalize_name_case | prefLabel | [{"@value":"biphenyl","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | [{"@value":"Biphenyl","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 247,542 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H10"],"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 247,543 | enrich_references | skos_definition | — | [{"@value":"A benzenoid aromatic compound that consists of two benzene rings connected by a single covalent bond. Biphe… | Merged ChEBI/PubChem definitions into skos:definition |
| 247,544 | enrich_references | references | [] | [{"@id":"gmelin:3808","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['92-52-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17097']; candidate_pubchem_cids=[7095, 13229, 15322, 243676]; selected_pubchem_cids=[7095]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 257,235 | chebi_altlabels | altLabel | [] | [{"@value":"1,1'-Biphenyl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… | Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 264,296 | consensus_match | altLabel | [{"@value":"1,1'-Biphenyl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… | [{"@value":"1,1'-Biphenyl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… | group_key=biphenyl||dimension=Environmental > media=Ground > geography=Agricultural; cas=92-52-4; added Common Chemistry CAS names as altLabel: 1,1′-Biphenyl, 1,1′-Diphenyl, Bibenzene, Carolid AL, Diphenyl, NSC 14916, Tetrosin LY; object_uuid=fo-8185587174959dd7 |
| 264,297 | consensus_match | cas_match_labels | — | {"92-52-4":"exactMatch"} | group_key=biphenyl||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'92-52-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-8185587174959dd7: {'92-52-4': 'exactMatch'} |
| 279,423 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H10"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H10"],"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Biphenyl' |
| 286,301 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H10"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H10"],"… | rdkit_post_consensus from 'c1ccc(-c2ccccc2)cc1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 291,657 | strip_catalogue_altlabels | altLabel | [{"@value":"1,1'-Biphenyl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… | [{"@value":"1,1'-Biphenyl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"c… | Removed 1 catalogue altLabel value(s): 'NSC 14916' (registry code) |
| 357,423 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/acf734ac-0f6d-… | associations resolved on the elementary layer |
| 393,820 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H10"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H10"],"… | typed the way the ontology types it |
| 403,009 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 403,010 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_33286","rdfs:label":"agrochemical","http://www.w3.org/2004/02/skos/core#d… | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/22613 | prefLabel | ef:agent/bootstrap_labels | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v0 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v1 |
| ef:activity/change/20260820T0738569779880000/22614 | name | ef:agent/bootstrap_labels | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v1 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v2 |
| ef:activity/change/20260820T0738569779880000/24755 | synonyms | ef:agent/bootstrap_labels | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v2 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v3 |
| ef:activity/change/20260820T0738569779880000/152760 | context | ef:agent/default_context_mapping | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v3 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v4 |
| ef:activity/change/20260820T0738569779880000/152761 | context_iri | ef:agent/default_context_mapping | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v4 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v5 |
| ef:activity/change/20260820T0738569779880000/220511 | unit_iri | ef:agent/unit_normalization | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v5 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v6 |
| ef:activity/change/20260820T0738569779880000/226181 | prefLabel | ef:agent/normalize_name_case | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v6 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v7 |
| ef:activity/change/20260820T0738569779880000/247542 | properties | ef:agent/enrich_references | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v7 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v8 |
| ef:activity/change/20260820T0738569779880000/247543 | skos_definition | ef:agent/enrich_references | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v8 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v9 |
| ef:activity/change/20260820T0738569779880000/247544 | references | ef:agent/enrich_references | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v9 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v10 |
| ef:activity/change/20260820T0738569779880000/257235 | altLabel | ef:agent/chebi_altlabels | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v10 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v11 |
| ef:activity/change/20260820T0738569779880000/264296 | altLabel | ef:agent/consensus_match | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v11 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v12 |
| ef:activity/change/20260820T0738569779880000/264297 | cas_match_labels | ef:agent/consensus_match | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v12 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v13 |
| ef:activity/change/20260820T0738569779880000/279423 | properties | ef:agent/opsin_iupac | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v13 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v14 |
| ef:activity/change/20260820T0738569779880000/286301 | properties | ef:agent/rdkit_post_consensus | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v14 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v15 |
| ef:activity/change/20260820T0738569779880000/291657 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v15 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v16 |
| ef:activity/change/20260820T0738569779880000/357423 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v16 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v17 |
| ef:activity/change/20260820T0738569779880000/393820 | properties | ef:agent/normalise_property_values | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v17 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v18 |
| ef:activity/change/20260820T0738569779880000/403009 | types | ef:agent/link_flows_to_their_substance | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v18 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v19 |
| ef:activity/change/20260820T0738569779880000/403010 | roles | ef:agent/link_flows_to_their_substance | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v19 | ef:flow/acf734ac-0f6d-4e1c-a41a-c0507e80ba99/v20 |