Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 2 catalogue altLabel value(s): 'MS 932' (grade code), 'NSC 170317' (registry code)
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=18699-02-0; cc_chebi_agreed_name='Actarit'; object_uuid=fo-fabeddc928f5cf94
cas_match_labels 1 consensus_match group_key=4-acetamidophenylaceticacid||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'18699-02-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-fabeddc928f5cf94: {'18699-02-0': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['18699-02-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_31173']; candidate_pubchem_cids=[2018, 87754]; selected_pubchem_cids=[2018]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
1,898 bootstrap_labels prefLabel [{"@value":"4-acetamidophenylacetic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:was… Bootstrapped prefLabel from legacy name field
1,899 bootstrap_labels name 4-acetamidophenylacetic acid Purged legacy name field to enforce prefLabel usage
1,900 bootstrap_labels synonyms ["organic","4-acetamidophenylaceticacid"] [] Removed legacy synonyms field in favor of structured labels
154,564 default_context_mapping context {"dimension":"Environmental","media":"Air","indoor":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
154,565 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
213,971 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
221,533 normalize_name_case prefLabel [{"@value":"4-acetamidophenylacetic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:was… [{"@value":"4-acetamidophenylacetic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:was… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
229,006 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H11NO3"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
229,007 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
229,008 enrich_references references [] [{"@id":"drugcentral:84","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"co… Added references with provenance; cas_numbers=['18699-02-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_31173']; candidate_pubchem_cids=[2018, 87754]; selected_pubchem_cids=[2018]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
248,842 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H11NO3"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H11NO3"… rdkit_pre_consensus from 'CC(=O)NC1=CC=C(C=C1)CC(=O)O'; added: monoisotopic_mass
254,599 chebi_altlabels altLabel [] [{"@value":"Actarit","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… Added 3 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
262,542 consensus_match prefLabel [{"@value":"4-acetamidophenylacetic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:was… [{"@value":"Actarit","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"consens… cas=18699-02-0; cc_chebi_agreed_name='Actarit'; object_uuid=fo-fabeddc928f5cf94
262,543 consensus_match altLabel [{"@value":"Actarit","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… [{"@value":"Orcl (TN)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… cas=18699-02-0; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-fabeddc928f5cf94
262,544 consensus_match altLabel [{"@value":"Orcl (TN)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… [{"@value":"Orcl (TN)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… group_key=4-acetamidophenylaceticacid||dimension=Environmental > media=Water > water_body=Surface water; cas=18699-02-0; added Common Chemistry CAS names as altLabel: (4-Acetamidophenyl)acetic acid, 2-(4-Acetamidophenyl)acetic acid, 4-(<em>N</em>-Acetylamino)phenylacetic acid, 4-(Acetylamino)benzeneacetic acid, 4-(Acetylamino)phenylacetic acid, Acetic acid, (<em>p</em>-acetamidophenyl)-, Benzeneacetic acid, 4-(acetylamino)-, MS 932, NSC 170317; object_uuid=fo-fabeddc928f5cf94
262,545 consensus_match cas_match_labels {"18699-02-0":"exactMatch"} group_key=4-acetamidophenylaceticacid||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'18699-02-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-fabeddc928f5cf94: {'18699-02-0': 'exactMatch'}
273,964 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H11NO3"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H11NO3"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'p-Acetamidophenylacetic acid'
280,364 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H11NO3"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H11NO3"… rdkit_post_consensus from 'CC(=O)Nc1ccc(CC(=O)O)cc1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
287,634 strip_catalogue_altlabels altLabel [{"@value":"Orcl (TN)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… [{"@value":"Orcl (TN)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… Removed 2 catalogue altLabel value(s): 'MS 932' (grade code), 'NSC 170317' (registry code)
358,304 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/b01c1cb0-c15f-… associations resolved on the elementary layer
388,254 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H11NO3"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H11NO3"… typed the way the ontology types it
394,908 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260821T1554374006150000/1898 prefLabel ef:agent/bootstrap_labels ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v0 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v1
ef:activity/change/20260821T1554374006150000/1899 name ef:agent/bootstrap_labels ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v1 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v2
ef:activity/change/20260821T1554374006150000/1900 synonyms ef:agent/bootstrap_labels ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v2 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v3
ef:activity/change/20260821T1554374006150000/154564 context ef:agent/default_context_mapping ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v3 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v4
ef:activity/change/20260821T1554374006150000/154565 context_iri ef:agent/default_context_mapping ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v4 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v5
ef:activity/change/20260821T1554374006150000/213971 unit_iri ef:agent/unit_normalization ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v5 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v6
ef:activity/change/20260821T1554374006150000/221533 prefLabel ef:agent/normalize_name_case ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v6 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v7
ef:activity/change/20260821T1554374006150000/229006 properties ef:agent/enrich_references ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v7 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v8
ef:activity/change/20260821T1554374006150000/229007 skos_definition ef:agent/enrich_references ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v8 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v9
ef:activity/change/20260821T1554374006150000/229008 references ef:agent/enrich_references ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v9 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v10
ef:activity/change/20260821T1554374006150000/248842 properties ef:agent/rdkit_pre_consensus ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v10 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v11
ef:activity/change/20260821T1554374006150000/254599 altLabel ef:agent/chebi_altlabels ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v11 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v12
ef:activity/change/20260821T1554374006150000/262542 prefLabel ef:agent/consensus_match ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v12 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v13
ef:activity/change/20260821T1554374006150000/262543 altLabel ef:agent/consensus_match ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v13 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v14
ef:activity/change/20260821T1554374006150000/262544 altLabel ef:agent/consensus_match ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v14 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v15
ef:activity/change/20260821T1554374006150000/262545 cas_match_labels ef:agent/consensus_match ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v15 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v16
ef:activity/change/20260821T1554374006150000/273964 properties ef:agent/opsin_iupac ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v16 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v17
ef:activity/change/20260821T1554374006150000/280364 properties ef:agent/rdkit_post_consensus ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v17 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v18
ef:activity/change/20260821T1554374006150000/287634 altLabel ef:agent/strip_catalogue_altlabels ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v18 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v19
ef:activity/change/20260821T1554374006150000/358304 concept_associations ef:agent/carry_associations_onto_flows ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v19 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v20
ef:activity/change/20260821T1554374006150000/388254 properties ef:agent/normalise_property_values ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v20 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v21
ef:activity/change/20260821T1554374006150000/394908 types ef:agent/link_flows_to_their_substance ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v21 ef:flow/b01c1cb0-c15f-4e90-a965-e88260665344/v22

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