Thymidine, 3'-azido-3'-deoxy-
Everything that changed this flow. Back to the flow
b576a01d-68c8-47d0-aec3-a75b0b440547
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 602670' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=thymidine,3'-azido-3'-deoxy-||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'pubchem']; cas_sources={'30516-87-1': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-0448bfec640c6198: {'30516-87-1': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['30516-87-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_10110']; candidate_pubchem_cids=[5726, 35370, 212986, 451515, 455007, 470152, 10220987, 15342951, 15764402, 22316389, 46705354, 51346748]; selected_pubchem_cids=[35370]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 9,835 | bootstrap_labels | prefLabel | — | [{"@value":"thymidine, 3'-azido-3'-deoxy-","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wa… | Bootstrapped prefLabel from legacy name field |
| 9,836 | bootstrap_labels | name | thymidine, 3'-azido-3'-deoxy- | — | Purged legacy name field to enforce prefLabel usage |
| 9,837 | bootstrap_labels | synonyms | ["1-(3-Azido-2,3-dideoxy-beta-D-ribofuranosyl)-5-methylpyrimidine-2,4-(1H,3H)-dione","1-(3-Azido-2,3-dideoxy-beta-D-rib… | [] | Removed legacy synonyms field in favor of structured labels |
| 157,560 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 157,561 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 216,607 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,397 | normalize_name_case | prefLabel | [{"@value":"thymidine, 3'-azido-3'-deoxy-","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wa… | [{"@value":"Thymidine, 3'-azido-3'-deoxy-","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wa… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 236,577 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13N5O4… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 236,578 | enrich_references | skos_definition | — | [{"@value":"A pyrimidine 2',3'-dideoxyribonucleoside compound having a 3'-azido substituent and thymine as the nucleoba… | Merged ChEBI/PubChem definitions into skos:definition |
| 236,579 | enrich_references | references | [] | [{"@id":"beilstein:763034","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['30516-87-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_10110']; candidate_pubchem_cids=[5726, 35370, 212986, 451515, 455007, 470152, 10220987, 15342951, 15764402, 22316389, 46705354, 51346748]; selected_pubchem_cids=[35370]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,020 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13N5O4… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13N5O4… | rdkit_pre_consensus from 'CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)N=[N+]=[N-]'; added: inchi2d_string, monoisotopic_mass |
| 255,787 | chebi_altlabels | altLabel | [] | [{"@value":"3'-azido-3'-deoxythymidine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 272,622 | consensus_match | altLabel | [{"@value":"3'-azido-3'-deoxythymidine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"3'-azido-3'-deoxythymidine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | group_key=thymidine,3'-azido-3'-deoxy-||dimension=Environmental > media=Ground > geography=Agricultural; cas=30516-87-1; added Common Chemistry CAS names as altLabel: 3-Azido-3-deoxythymidine, 3′-AZT, 3′-Azido-3′-deoxythymidine, 3′-Azidothymidine, 3′-Deoxy-3′-azidothymidine, AZT (pharmaceutical), Azitidin, BW-A 509U, Combvir, Compound S, NSC 602670, Retrovir IV, Retrovis, Thymidine, 3′-azido-3′-deoxy-, Timazid, Viro-Z, ZDV, ZVD, Zido-H; object_uuid=fo-0448bfec640c6198 |
| 272,623 | consensus_match | cas_match_labels | — | {"30516-87-1":"exactMatch"} | group_key=thymidine,3'-azido-3'-deoxy-||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'pubchem']; cas_sources={'30516-87-1': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-0448bfec640c6198: {'30516-87-1': 'exactMatch'} |
| 276,206 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13N5O4… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13N5O4… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Thymidine, 3'-azido-3'-deoxy-' |
| 282,789 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13N5O4… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13N5O4… | rdkit_post_consensus from 'Cc1cn([C@H]2C[C@H](N=[N+]=[N-])[C@@H](CO)O2)c(=O)[nH]c1=O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 289,317 | strip_catalogue_altlabels | altLabel | [{"@value":"3'-azido-3'-deoxythymidine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"3'-azido-3'-deoxythymidine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Removed 1 catalogue altLabel value(s): 'NSC 602670' (registry code) |
| 359,805 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/b576a01d-68c8-… | associations resolved on the elementary layer |
| 390,551 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13N5O4… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13N5O4… | typed the way the ontology types it |
| 398,206 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 398,207 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13N5O4… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H13N5O4… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/9835 | prefLabel | ef:agent/bootstrap_labels | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v0 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v1 |
| ef:activity/change/20260821T1554374006150000/9836 | name | ef:agent/bootstrap_labels | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v1 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v2 |
| ef:activity/change/20260821T1554374006150000/9837 | synonyms | ef:agent/bootstrap_labels | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v2 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v3 |
| ef:activity/change/20260821T1554374006150000/157560 | context | ef:agent/default_context_mapping | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v3 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v4 |
| ef:activity/change/20260821T1554374006150000/157561 | context_iri | ef:agent/default_context_mapping | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v4 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v5 |
| ef:activity/change/20260821T1554374006150000/216607 | unit_iri | ef:agent/unit_normalization | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v5 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v6 |
| ef:activity/change/20260821T1554374006150000/223397 | prefLabel | ef:agent/normalize_name_case | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v6 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v7 |
| ef:activity/change/20260821T1554374006150000/236577 | properties | ef:agent/enrich_references | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v7 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v8 |
| ef:activity/change/20260821T1554374006150000/236578 | skos_definition | ef:agent/enrich_references | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v8 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v9 |
| ef:activity/change/20260821T1554374006150000/236579 | references | ef:agent/enrich_references | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v9 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v10 |
| ef:activity/change/20260821T1554374006150000/251020 | properties | ef:agent/rdkit_pre_consensus | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v10 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v11 |
| ef:activity/change/20260821T1554374006150000/255787 | altLabel | ef:agent/chebi_altlabels | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v11 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v12 |
| ef:activity/change/20260821T1554374006150000/272622 | altLabel | ef:agent/consensus_match | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v12 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v13 |
| ef:activity/change/20260821T1554374006150000/272623 | cas_match_labels | ef:agent/consensus_match | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v13 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v14 |
| ef:activity/change/20260821T1554374006150000/276206 | properties | ef:agent/opsin_iupac | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v14 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v15 |
| ef:activity/change/20260821T1554374006150000/282789 | properties | ef:agent/rdkit_post_consensus | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v15 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v16 |
| ef:activity/change/20260821T1554374006150000/289317 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v16 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v17 |
| ef:activity/change/20260821T1554374006150000/359805 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v17 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v18 |
| ef:activity/change/20260821T1554374006150000/390551 | properties | ef:agent/normalise_property_values | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v18 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v19 |
| ef:activity/change/20260821T1554374006150000/398206 | types | ef:agent/link_flows_to_their_substance | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v19 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v20 |
| ef:activity/change/20260821T1554374006150000/398207 | properties | ef:agent/link_flows_to_their_substance | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v20 | ef:flow/b576a01d-68c8-47d0-aec3-a75b0b440547/v21 |