Consensus flow list

By field

15 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 3 catalogue altLabel value(s): 'E 270' (grade code), 'Meatshure 509' (trade name), 'NSC 367919' (registry code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=lacticacid||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'50-21-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-009fc56a81bc2714: {'50-21-5': 'exactMatch'}
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
dcterms_is_replaced_by 1 pipeline.deduplication duplicate of 8fbbe8a1-da56-4184-9456-b7a5b88a7f68
is_replaced_by_uuid 1 pipeline.deduplication duplicate of 8fbbe8a1-da56-4184-9456-b7a5b88a7f68
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
owl_deprecated 1 pipeline.deduplication duplicate of 8fbbe8a1-da56-4184-9456-b7a5b88a7f68
references 1 enrich_references Added references with provenance; cas_numbers=['50-21-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28358', 'http://purl.obolibrary.org/obo/CHEBI_78320']; candidate_pubchem_cids=[612, 61503, 107689, 5460179, 73417092]; selected_pubchem_cids=[612]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
17,062 bootstrap_labels prefLabel [{"@value":"Lactic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… Bootstrapped prefLabel from legacy name field
17,063 bootstrap_labels name Lactic acid Purged legacy name field to enforce prefLabel usage
17,064 bootstrap_labels synonyms ["2-hydroxypropanoic acid"] [] Removed legacy synonyms field in favor of structured labels
135,210 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Surface water"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
135,211 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-suwa Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
218,935 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
224,998 normalize_name_case prefLabel [{"@value":"Lactic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… [{"@value":"Lactic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
243,196 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H6O3"],"… Added ChEBI/PubChem properties (chebi_ids=2, pubchem_cids=1)
243,197 enrich_references skos_definition [{"@value":"A 2-hydroxy monocarboxylic acid that is propanoic acid in which one of the α-hydrogens is replaced by a hyd… Merged ChEBI/PubChem definitions into skos:definition
243,198 enrich_references references [] [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J1.358G","provenance":{"prov:wasGeneratedBy":"enrich_reference… Added references with provenance; cas_numbers=['50-21-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28358', 'http://purl.obolibrary.org/obo/CHEBI_78320']; candidate_pubchem_cids=[612, 61503, 107689, 5460179, 73417092]; selected_pubchem_cids=[612]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
252,928 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H6O3"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H6O3"],"… rdkit_pre_consensus from 'CC(C(=O)O)O'; added: monoisotopic_mass
256,630 chebi_altlabels altLabel [] [{"@value":"(+-)-2-hydroxypropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasA… Added 9 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s)
268,305 consensus_match altLabel [{"@value":"(+-)-2-hydroxypropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasA… [{"@value":"(+-)-2-hydroxypropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasA… group_key=lacticacid||dimension=Environmental > media=Water > water_body=Long-term; cas=50-21-5; added Common Chemistry CAS names as altLabel: (<em>RS</em>)-2-Hydroxypropanoic acid, (±)-Lactic acid, 2-Hydroxy-2-methylacetic acid, <em>dl</em>-Lactic acid, Biolac, Chem-Cast, E 270, HiPure 88, Kiwilustre, Lactate, Lurex, Masashino Lactic acid 90F, MeSH ID: D019344, Meatshure 509, Milk acid, Musashino lactate 50F, NSC 367919, Propanoic acid, 2-hydroxy-, Purac 55, Purac 60, Purac FCC 80, Purac FCC 88, Purac H 888, Purac HS 100, Purac HS 50, Purac HS 88, Purac PF 90, Purac UltraPure 90, RITALAC LA, Rac-lactic acid, Tonsillosan, α-Hydroxypropanoic acid, α-Hydroxypropionic acid; object_uuid=fo-009fc56a81bc2714
268,306 consensus_match cas_match_labels {"50-21-5":"exactMatch"} group_key=lacticacid||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'50-21-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-009fc56a81bc2714: {'50-21-5': 'exactMatch'}
278,131 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H6O3"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H6O3"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Lactic Acid'
284,870 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H6O3"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H6O3"],"… rdkit_post_consensus from 'CC(O)C(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
290,719 strip_catalogue_altlabels altLabel [{"@value":"(+-)-2-hydroxypropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasA… [{"@value":"(+-)-2-hydroxypropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasA… Removed 3 catalogue altLabel value(s): 'E 270' (grade code), 'Meatshure 509' (trade name), 'NSC 367919' (registry code)
293,828 pipeline.deduplication owl_deprecated yes duplicate of 8fbbe8a1-da56-4184-9456-b7a5b88a7f68
293,829 pipeline.deduplication dcterms_is_replaced_by urn:uuid:8fbbe8a1-da56-4184-9456-b7a5b88a7f68 duplicate of 8fbbe8a1-da56-4184-9456-b7a5b88a7f68
293,830 pipeline.deduplication is_replaced_by_uuid 8fbbe8a1-da56-4184-9456-b7a5b88a7f68 duplicate of 8fbbe8a1-da56-4184-9456-b7a5b88a7f68
392,487 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H6O3"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H6O3"],"… typed the way the ontology types it
400,989 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260822T0600486828500000/17062 prefLabel ef:agent/bootstrap_labels ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v0 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v1
ef:activity/change/20260822T0600486828500000/17063 name ef:agent/bootstrap_labels ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v1 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v2
ef:activity/change/20260822T0600486828500000/17064 synonyms ef:agent/bootstrap_labels ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v2 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v3
ef:activity/change/20260822T0600486828500000/135210 context ef:agent/default_context_mapping ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v3 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v4
ef:activity/change/20260822T0600486828500000/135211 context_iri ef:agent/default_context_mapping ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v4 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v5
ef:activity/change/20260822T0600486828500000/218935 unit_iri ef:agent/unit_normalization ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v5 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v6
ef:activity/change/20260822T0600486828500000/224998 prefLabel ef:agent/normalize_name_case ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v6 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v7
ef:activity/change/20260822T0600486828500000/243196 properties ef:agent/enrich_references ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v7 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v8
ef:activity/change/20260822T0600486828500000/243197 skos_definition ef:agent/enrich_references ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v8 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v9
ef:activity/change/20260822T0600486828500000/243198 references ef:agent/enrich_references ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v9 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v10
ef:activity/change/20260822T0600486828500000/252928 properties ef:agent/rdkit_pre_consensus ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v10 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v11
ef:activity/change/20260822T0600486828500000/256630 altLabel ef:agent/chebi_altlabels ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v11 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v12
ef:activity/change/20260822T0600486828500000/268305 altLabel ef:agent/consensus_match ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v12 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v13
ef:activity/change/20260822T0600486828500000/268306 cas_match_labels ef:agent/consensus_match ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v13 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v14
ef:activity/change/20260822T0600486828500000/278131 properties ef:agent/opsin_iupac ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v14 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v15
ef:activity/change/20260822T0600486828500000/284870 properties ef:agent/rdkit_post_consensus ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v15 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v16
ef:activity/change/20260822T0600486828500000/290719 altLabel ef:agent/strip_catalogue_altlabels ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v16 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v17
ef:activity/change/20260822T0600486828500000/293828 owl_deprecated ef:agent/pipeline.deduplication ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v17 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v18
ef:activity/change/20260822T0600486828500000/293829 dcterms_is_replaced_by ef:agent/pipeline.deduplication ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v18 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v19
ef:activity/change/20260822T0600486828500000/293830 is_replaced_by_uuid ef:agent/pipeline.deduplication ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v19 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v20
ef:activity/change/20260822T0600486828500000/392487 properties ef:agent/normalise_property_values ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v20 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v21
ef:activity/change/20260822T0600486828500000/400989 types ef:agent/link_flows_to_their_substance ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v21 ef:flow/bb0a6d7c-205c-4be3-a02d-60d97924e799/v22

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