(2s)-5-amino-2-{[(2s)-2-aminopropanoyl]amino}-5-oxopentanoic Acid
Everything that changed this flow. Back to the flow
bd7a2b85-491b-4957-af70-62cb1d22af50
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=(2s)-5-amino-2-{[(2s)-2-aminopropanoyl]amino}-5-oxopentanoicacid||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi']; cas_sources={'39537-23-0': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-509a438ad2baae13: {'39537-23-0': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['39537-23-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_73788']; candidate_pubchem_cids=[5961, 9772, 123935, 542027, 7014883, 13848163, 23562291]; selected_pubchem_cids=[123935]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 4,916 | bootstrap_labels | prefLabel | — | [{"@value":"(2s)-5-amino-2-{[(2s)-2-aminopropanoyl]amino}-5-oxopentanoic acid","@language":"en","source":{"prov:wasGene… | Bootstrapped prefLabel from legacy name field |
| 4,917 | bootstrap_labels | name | (2s)-5-amino-2-{[(2s)-2-aminopropanoyl]amino}-5-oxopentanoic acid | — | Purged legacy name field to enforce prefLabel usage |
| 4,918 | bootstrap_labels | synonyms | ["organic","l-ala-l-gln"] | [] | Removed legacy synonyms field in favor of structured labels |
| 162,144 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| 162,145 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| 214,987 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,235 | normalize_name_case | prefLabel | [{"@value":"(2s)-5-amino-2-{[(2s)-2-aminopropanoyl]amino}-5-oxopentanoic acid","@language":"en","source":{"prov:wasGene… | [{"@value":"(2s)-5-amino-2-{[(2s)-2-aminopropanoyl]amino}-5-oxopentanoic Acid","@language":"en","source":{"prov:wasGene… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 231,911 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H15N3O4"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 231,912 | enrich_references | skos_definition | — | [{"@value":"A dipeptide formed from L-alanyl and L-glutamine residues.","@language":"en","provenance":{"prov:wasGenerat… | Merged ChEBI/PubChem definitions into skos:definition |
| 231,913 | enrich_references | references | [] | [{"@id":"drugcentral:4319","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['39537-23-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_73788']; candidate_pubchem_cids=[5961, 9772, 123935, 542027, 7014883, 13848163, 23562291]; selected_pubchem_cids=[123935]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,680 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H15N3O4"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H15N3O4"… | rdkit_pre_consensus from 'CC(C(=O)NC(CCC(=O)N)C(=O)O)N'; added: inchi2d_string, monoisotopic_mass |
| 255,012 | chebi_altlabels | altLabel | [] | [{"@value":"AQ","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 257,682 | consensus_match | altLabel | [{"@value":"AQ","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | [{"@value":"AQ","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | group_key=(2s)-5-amino-2-{[(2s)-2-aminopropanoyl]amino}-5-oxopentanoicacid||dimension=Environmental > media=Air > strata=Unknown; cas=39537-23-0; added Common Chemistry CAS names as altLabel: 13: PN: WO2022111997 PAGE: 22 claimed sequence, 13: PN: WO2023161197 SEQID: 15 claimed sequence, 4: PN: WO2025015657 SEQID: 4 claimed sequence, 63: PN: WO2020097235 SEQID: 292 claimed protein, 72: PN: US20070066537 PAGE: 17 claimed protein, 96: PN: WO2011146121 PAGE: 115 claimed sequence, <span class="text-smallcaps">L</smallcap>-Glutamine, <em>N</em><sup>2</sup>-<smallcap>L</span>-alanyl-, <span class="text-smallcaps">L</smallcap>-Glutamine, <smallcap>L</span>-alanyl-, Dipeptamin, Dipeptiven, GlutaMAX, GlutaMAX I, Glutamine, <em>N</em><sup>2</sup>-<span class="text-smallcaps">L</span>-alanyl-, Sustamine; object_uuid=fo-509a438ad2baae13 |
| 257,683 | consensus_match | cas_match_labels | — | {"39537-23-0":"exactMatch"} | group_key=(2s)-5-amino-2-{[(2s)-2-aminopropanoyl]amino}-5-oxopentanoicacid||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi']; cas_sources={'39537-23-0': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-509a438ad2baae13: {'39537-23-0': 'exactMatch'} |
| 274,830 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H15N3O4"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H15N3O4"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(2s)-5-amino-2-{[(2s)-2-aminopropanoyl]amino}-5-oxopentanoic Acid' |
| 281,297 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H15N3O4"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H15N3O4"… | rdkit_post_consensus from 'C[C@H](N)C(=O)N[C@@H](CCC(N)=O)C(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,251 | dedupe_altlabels | altLabel | [{"@value":"AQ","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | [{"@value":"AQ","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | Deduplicated altLabel values and removed entries matching prefLabel |
| 362,117 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/bd7a2b85-491b-… | associations resolved on the elementary layer |
| 389,137 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H15N3O4"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H15N3O4"… | typed the way the ontology types it |
| 396,156 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 396,157 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H15N3O4"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H15N3O4"… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/4916 | prefLabel | ef:agent/bootstrap_labels | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v0 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v1 |
| ef:activity/change/20260820T0738569779880000/4917 | name | ef:agent/bootstrap_labels | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v1 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v2 |
| ef:activity/change/20260820T0738569779880000/4918 | synonyms | ef:agent/bootstrap_labels | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v2 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v3 |
| ef:activity/change/20260820T0738569779880000/162144 | context | ef:agent/default_context_mapping | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v3 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v4 |
| ef:activity/change/20260820T0738569779880000/162145 | context_iri | ef:agent/default_context_mapping | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v4 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v5 |
| ef:activity/change/20260820T0738569779880000/214987 | unit_iri | ef:agent/unit_normalization | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v5 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v6 |
| ef:activity/change/20260820T0738569779880000/222235 | prefLabel | ef:agent/normalize_name_case | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v6 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v7 |
| ef:activity/change/20260820T0738569779880000/231911 | properties | ef:agent/enrich_references | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v7 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v8 |
| ef:activity/change/20260820T0738569779880000/231912 | skos_definition | ef:agent/enrich_references | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v8 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v9 |
| ef:activity/change/20260820T0738569779880000/231913 | references | ef:agent/enrich_references | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v9 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v10 |
| ef:activity/change/20260820T0738569779880000/249680 | properties | ef:agent/rdkit_pre_consensus | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v10 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v11 |
| ef:activity/change/20260820T0738569779880000/255012 | altLabel | ef:agent/chebi_altlabels | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v11 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v12 |
| ef:activity/change/20260820T0738569779880000/257682 | altLabel | ef:agent/consensus_match | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v12 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v13 |
| ef:activity/change/20260820T0738569779880000/257683 | cas_match_labels | ef:agent/consensus_match | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v13 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v14 |
| ef:activity/change/20260820T0738569779880000/274830 | properties | ef:agent/opsin_iupac | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v14 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v15 |
| ef:activity/change/20260820T0738569779880000/281297 | properties | ef:agent/rdkit_post_consensus | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v15 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v16 |
| ef:activity/change/20260820T0738569779880000/292251 | altLabel | ef:agent/dedupe_altlabels | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v16 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v17 |
| ef:activity/change/20260820T0738569779880000/362117 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v17 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v18 |
| ef:activity/change/20260820T0738569779880000/389137 | properties | ef:agent/normalise_property_values | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v18 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v19 |
| ef:activity/change/20260820T0738569779880000/396156 | types | ef:agent/link_flows_to_their_substance | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v19 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v20 |
| ef:activity/change/20260820T0738569779880000/396157 | properties | ef:agent/link_flows_to_their_substance | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v20 | ef:flow/bd7a2b85-491b-4957-af70-62cb1d22af50/v21 |