Paromomycin
Everything that changed this flow. Back to the flow
bd9e7793-89ac-447f-91c8-b21746b6f027
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'Antibiotic 2230D' (trade name), 'R 400' (grade code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=paromomycin||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7542-37-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-3e63c9a0f3f3c6b7: {'7542-37-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['7542-37-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_7934']; candidate_pubchem_cids=[4689, 24176, 165580, 735842, 44186758, 45358711, 134771120]; selected_pubchem_cids=[165580]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 18,644 | bootstrap_labels | prefLabel | — | [{"@value":"paromomycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Bootstrapped prefLabel from legacy name field |
| 18,645 | bootstrap_labels | name | paromomycin | — | Purged legacy name field to enforce prefLabel usage |
| 20,335 | bootstrap_labels | synonyms | ["(2S,3S,4R,5R,6R)-5-amino-2-(aminomethyl)-6-[(2R,3S,4R)-5-[(1R,3S,5R,6S)-3,5-diamino-2-[(2S,3R,4R,5S,6R)-3-amino-4,5-d… | [] | Removed legacy synonyms field in favor of structured labels |
| 162,214 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 162,215 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 219,428 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,335 | normalize_name_case | prefLabel | [{"@value":"paromomycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Paromomycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 244,579 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C23H45N5O1… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 244,580 | enrich_references | skos_definition | — | [{"@value":"An amino cyclitol glycoside that is the 1-O-(2-amino-2-deoxy-α-D-glucopyranoside) and the 3-O-(2,6-diamino-… | Merged ChEBI/PubChem definitions into skos:definition |
| 244,581 | enrich_references | references | [] | [{"@id":"drugcentral:2067","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['7542-37-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_7934']; candidate_pubchem_cids=[4689, 24176, 165580, 735842, 44186758, 45358711, 134771120]; selected_pubchem_cids=[165580]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,333 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C23H45N5O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C23H45N5O1… | rdkit_pre_consensus from 'C1C(C(C(C(C1N)OC2C(C(C(C(O2)CO)O)O)N)OC3C(C(C(O3)CO)OC4C(C(C(C(O4)CN)O)O)N)O)O)N'; added: inchi2d_string, monoisotopic_mass |
| 256,827 | chebi_altlabels | altLabel | [] | [{"@value":"(1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy… | Added 20 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 270,373 | consensus_match | altLabel | [{"@value":"(1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy… | [{"@value":"(1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy… | group_key=paromomycin||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=7542-37-2; added Common Chemistry CAS names as altLabel: <em>O</em>-2,6-Diamino-2,6-dideoxy-β-<span class="text-smallcaps">L</smallcap>-idopyranosyl-(1→3)-<em>O</em>-β-<smallcap>D</smallcap>-ribofuranosyl-(1→5)-<em>O</em>-[2-amino-2-deoxy-α-<smallcap>D</smallcap>-glucopyranosyl-(1→4)]-2-deoxy-<smallcap>D</span>-streptamine, <span class="text-smallcaps">D</smallcap>-Streptamine, <em>O</em>-2,6-diamino-2,6-dideoxy-β-<smallcap>L</smallcap>-idopyranosyl-(1→3)-<em>O</em>-β-<smallcap>D</smallcap>-ribofuranosyl-(1→5)-<em>O</em>-[2-amino-2-deoxy-α-<smallcap>D</span>-glucopyranosyl-(1→4)]-2-deoxy-, <span class="text-smallcaps">D</smallcap>-Streptamine, <em>O</em>-2-amino-2-deoxy-α-<smallcap>D</smallcap>-glucopyranosyl-(1→4)-<em>O</em>-[<em>O</em>-2,6-diamino-2,6-dideoxy-β-<smallcap>L</smallcap>-idopyranosyl-(1→3)-β-<smallcap>D</span>-ribofuranosyl-(1→5)]-2-deoxy-, Aminosidine I, Amminosidin, Antibiotic 2230D, Antibiotic 503-3, Antibiotic SF 767B, Gabbromicina, Gabbromycin, Gabromycin, Humycin, MeSH ID: D010303, Quintomycin C, Streptamine, <em>O</em>-2,6-diamino-2,6-dideoxy-β-<span class="text-smallcaps">L</smallcap>-idopyranosyl-(1→3)-<em>O</em>-β-<smallcap>D</smallcap>-ribofuranosyl-(1→5)-<em>O</em>-[2-amino-2-deoxy-α-<smallcap>D</span>-glucopyranosyl-(1→4)]-2-deoxy-; object_uuid=fo-3e63c9a0f3f3c6b7 |
| 270,374 | consensus_match | cas_match_labels | — | {"7542-37-2":"exactMatch"} | group_key=paromomycin||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7542-37-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-3e63c9a0f3f3c6b7: {'7542-37-2': 'exactMatch'} |
| 278,544 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C23H45N5O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C23H45N5O1… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside' |
| 285,314 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C23H45N5O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C23H45N5O1… | rdkit_post_consensus from 'NC[C@@H]1O[C@H](O[C@H]2[C@@H](O)[C@H](O[C@@H]3[C@@H](O)[C@H](N)C[C@H](N)[C@H]3O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3N)O[C@@H]2CO)[C@H](N)[C@@H](O)[C@@H]1O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 291,009 | strip_catalogue_altlabels | altLabel | [{"@value":"(1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy… | [{"@value":"(1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy… | Removed 2 catalogue altLabel value(s): 'Antibiotic 2230D' (trade name), 'R 400' (grade code) |
| 362,132 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/bd9e7793-89ac-… | associations resolved on the elementary layer |
| 392,911 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C23H45N5O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C23H45N5O1… | typed the way the ontology types it |
| 401,606 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 401,607 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C23H45N5O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C23H45N5O1… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/18644 | prefLabel | ef:agent/bootstrap_labels | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v0 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v1 |
| ef:activity/change/20260821T1554374006150000/18645 | name | ef:agent/bootstrap_labels | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v1 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v2 |
| ef:activity/change/20260821T1554374006150000/20335 | synonyms | ef:agent/bootstrap_labels | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v2 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v3 |
| ef:activity/change/20260821T1554374006150000/162214 | context | ef:agent/default_context_mapping | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v3 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v4 |
| ef:activity/change/20260821T1554374006150000/162215 | context_iri | ef:agent/default_context_mapping | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v4 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v5 |
| ef:activity/change/20260821T1554374006150000/219428 | unit_iri | ef:agent/unit_normalization | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v5 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v6 |
| ef:activity/change/20260821T1554374006150000/225335 | prefLabel | ef:agent/normalize_name_case | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v6 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v7 |
| ef:activity/change/20260821T1554374006150000/244579 | properties | ef:agent/enrich_references | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v7 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v8 |
| ef:activity/change/20260821T1554374006150000/244580 | skos_definition | ef:agent/enrich_references | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v8 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v9 |
| ef:activity/change/20260821T1554374006150000/244581 | references | ef:agent/enrich_references | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v9 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v10 |
| ef:activity/change/20260821T1554374006150000/253333 | properties | ef:agent/rdkit_pre_consensus | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v10 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v11 |
| ef:activity/change/20260821T1554374006150000/256827 | altLabel | ef:agent/chebi_altlabels | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v11 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v12 |
| ef:activity/change/20260821T1554374006150000/270373 | altLabel | ef:agent/consensus_match | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v12 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v13 |
| ef:activity/change/20260821T1554374006150000/270374 | cas_match_labels | ef:agent/consensus_match | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v13 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v14 |
| ef:activity/change/20260821T1554374006150000/278544 | properties | ef:agent/opsin_iupac | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v14 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v15 |
| ef:activity/change/20260821T1554374006150000/285314 | properties | ef:agent/rdkit_post_consensus | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v15 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v16 |
| ef:activity/change/20260821T1554374006150000/291009 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v16 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v17 |
| ef:activity/change/20260821T1554374006150000/362132 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v17 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v18 |
| ef:activity/change/20260821T1554374006150000/392911 | properties | ef:agent/normalise_property_values | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v18 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v19 |
| ef:activity/change/20260821T1554374006150000/401606 | types | ef:agent/link_flows_to_their_substance | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v19 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v20 |
| ef:activity/change/20260821T1554374006150000/401607 | properties | ef:agent/link_flows_to_their_substance | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v20 | ef:flow/bd9e7793-89ac-447f-91c8-b21746b6f027/v21 |