Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 2 catalogue altLabel value(s): 'NSC 13000' (registry code), 'NSC 28747' (registry code)
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=90-45-9; cc_chebi_agreed_name='9-Aminoacridine'; object_uuid=fo-867011ebb7e03d7c
cas_match_labels 1 consensus_match group_key=aminoacridine||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'90-45-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-867011ebb7e03d7c: {'90-45-9': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
ec_numbers 1 ec_cross_check Resolved from EC-inventory: 201-995-6 from CAS 90-45-9
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['90-45-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_74789']; candidate_pubchem_cids=[7019, 11352, 248607]; selected_pubchem_cids=[7019]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

23
# Step Field From To Why
12,941 bootstrap_labels prefLabel [{"@value":"aminoacridine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… Bootstrapped prefLabel from legacy name field
12,942 bootstrap_labels name aminoacridine Purged legacy name field to enforce prefLabel usage
12,943 bootstrap_labels synonyms ["10-Amino-5-azaanthracene","7AD","8AD","9-AA","9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE","9-AMINOACRID… [] Removed legacy synonyms field in favor of structured labels
167,554 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
167,555 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
217,619 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
224,087 normalize_name_case prefLabel [{"@value":"aminoacridine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… [{"@value":"Aminoacridine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
226,957 ec_cross_check ec_numbers [] ["201-995-6"] Resolved from EC-inventory: 201-995-6 from CAS 90-45-9
239,461 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H10N2"]… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
239,462 enrich_references skos_definition [{"@value":"An aminoacridine that is acridine in which the hydrogen at position 9 is replaced by an amino group. A fluo… Merged ChEBI/PubChem definitions into skos:definition
239,463 enrich_references references [] [{"@id":"drugcentral:160","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"c… Added references with provenance; cas_numbers=['90-45-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_74789']; candidate_pubchem_cids=[7019, 11352, 248607]; selected_pubchem_cids=[7019]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
251,848 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H10N2"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H10N2"]… rdkit_pre_consensus from 'C1=CC=C2C(=C1)C(=C3C=CC=CC3=N2)N'; added: monoisotopic_mass
256,152 chebi_altlabels altLabel [] [{"@value":"10-amino-5-azaanthracene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttri… Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
263,775 consensus_match prefLabel [{"@value":"Aminoacridine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… [{"@value":"9-Aminoacridine","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":… cas=90-45-9; cc_chebi_agreed_name='9-Aminoacridine'; object_uuid=fo-867011ebb7e03d7c
263,776 consensus_match altLabel [{"@value":"10-amino-5-azaanthracene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttri… [{"@value":"10-amino-5-azaanthracene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttri… cas=90-45-9; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-867011ebb7e03d7c
263,777 consensus_match altLabel [{"@value":"10-amino-5-azaanthracene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttri… [{"@value":"10-amino-5-azaanthracene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttri… group_key=aminoacridine||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); cas=90-45-9; added Common Chemistry CAS names as altLabel: Acridine, 9-amino-, Izoacridina, MeSH ID: D000585, Monacrin, NSC 13000, NSC 28747; object_uuid=fo-867011ebb7e03d7c
263,778 consensus_match cas_match_labels {"90-45-9":"exactMatch"} group_key=aminoacridine||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'90-45-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-867011ebb7e03d7c: {'90-45-9': 'exactMatch'}
277,041 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H10N2"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H10N2"]… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '9-Aminoacridine'
283,693 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H10N2"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H10N2"]… rdkit_post_consensus from 'Nc1c2ccccc2nc2ccccc12'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
289,915 strip_catalogue_altlabels altLabel [{"@value":"10-amino-5-azaanthracene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttri… [{"@value":"10-amino-5-azaanthracene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttri… Removed 2 catalogue altLabel value(s): 'NSC 13000' (registry code), 'NSC 28747' (registry code)
364,803 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/c6eb79e6-2241-… associations resolved on the elementary layer
391,393 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H10N2"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H10N2"]… typed the way the ontology types it
399,404 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

23 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260821T1554374006150000/12941 prefLabel ef:agent/bootstrap_labels ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v0 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v1
ef:activity/change/20260821T1554374006150000/12942 name ef:agent/bootstrap_labels ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v1 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v2
ef:activity/change/20260821T1554374006150000/12943 synonyms ef:agent/bootstrap_labels ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v2 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v3
ef:activity/change/20260821T1554374006150000/167554 context ef:agent/default_context_mapping ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v3 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v4
ef:activity/change/20260821T1554374006150000/167555 context_iri ef:agent/default_context_mapping ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v4 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v5
ef:activity/change/20260821T1554374006150000/217619 unit_iri ef:agent/unit_normalization ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v5 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v6
ef:activity/change/20260821T1554374006150000/224087 prefLabel ef:agent/normalize_name_case ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v6 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v7
ef:activity/change/20260821T1554374006150000/226957 ec_numbers ef:agent/ec_cross_check ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v7 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v8
ef:activity/change/20260821T1554374006150000/239461 properties ef:agent/enrich_references ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v8 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v9
ef:activity/change/20260821T1554374006150000/239462 skos_definition ef:agent/enrich_references ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v9 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v10
ef:activity/change/20260821T1554374006150000/239463 references ef:agent/enrich_references ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v10 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v11
ef:activity/change/20260821T1554374006150000/251848 properties ef:agent/rdkit_pre_consensus ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v11 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v12
ef:activity/change/20260821T1554374006150000/256152 altLabel ef:agent/chebi_altlabels ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v12 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v13
ef:activity/change/20260821T1554374006150000/263775 prefLabel ef:agent/consensus_match ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v13 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v14
ef:activity/change/20260821T1554374006150000/263776 altLabel ef:agent/consensus_match ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v14 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v15
ef:activity/change/20260821T1554374006150000/263777 altLabel ef:agent/consensus_match ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v15 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v16
ef:activity/change/20260821T1554374006150000/263778 cas_match_labels ef:agent/consensus_match ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v16 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v17
ef:activity/change/20260821T1554374006150000/277041 properties ef:agent/opsin_iupac ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v17 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v18
ef:activity/change/20260821T1554374006150000/283693 properties ef:agent/rdkit_post_consensus ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v18 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v19
ef:activity/change/20260821T1554374006150000/289915 altLabel ef:agent/strip_catalogue_altlabels ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v19 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v20
ef:activity/change/20260821T1554374006150000/364803 concept_associations ef:agent/carry_associations_onto_flows ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v20 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v21
ef:activity/change/20260821T1554374006150000/391393 properties ef:agent/normalise_property_values ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v21 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v22
ef:activity/change/20260821T1554374006150000/399404 types ef:agent/link_flows_to_their_substance ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v22 ef:flow/c6eb79e6-2241-418a-97d2-b7d15132dbbe/v23

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