Validamycin A
Everything that changed this flow. Back to the flow
c9399a97-de63-483a-849a-c874bf21cb49
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 4 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | cas=37248-47-8; cc_chebi_agreed_name='Validamycin A'; object_uuid=fo-79989dc5f72cbc27 |
| cas_match_labels | 1 | consensus_match | group_key=validamycin||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'pubchem']; cas_sources={'37248-47-8': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-79989dc5f72cbc27: {'37248-47-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['37248-47-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_29703']; candidate_pubchem_cids=[443629, 12918475, 13313077, 20055064, 45358335, 126970045]; selected_pubchem_cids=[443629]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
24| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 13,465 | bootstrap_labels | prefLabel | — | [{"@value":"validamycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Bootstrapped prefLabel from legacy name field |
| 13,466 | bootstrap_labels | name | validamycin | — | Purged legacy name field to enforce prefLabel usage |
| 13,467 | bootstrap_labels | synonyms | ["(1S-(1a,4a,5B,6a))-1,5,6-Trideoxy-3-O-B-D-glucopyranosyl-5-(hydroxymethyl)-1-((4,5,6-trihydroxy-3-(hydroxymethyl)-2-c… | [] | Removed legacy synonyms field in favor of structured labels |
| 168,976 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 168,977 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 217,793 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 224,218 | normalize_name_case | prefLabel | [{"@value":"validamycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Validamycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 239,945 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H35NO13… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 239,946 | enrich_references | skos_definition | — | [{"@value":"A member of the class of validamycins that is (1R,2S,3S,4S,6R)-4-amino-6-(hydroxymethyl)cyclohexane-1,2,3-t… | Merged ChEBI/PubChem definitions into skos:definition |
| 239,947 | enrich_references | references | [] | [{"@id":"bpdb:677","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"consensu… | Added references with provenance; cas_numbers=['37248-47-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_29703']; candidate_pubchem_cids=[443629, 12918475, 13313077, 20055064, 45358335, 126970045]; selected_pubchem_cids=[443629]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,995 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H35NO13… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H35NO13… | rdkit_pre_consensus from 'C1C(C(C(C(C1NC2C=C(C(C(C2O)O)O)CO)O)O)OC3C(C(C(C(O3)CO)O)O)O)CO'; added: inchi2d_string |
| 256,221 | chebi_altlabels | altLabel | [] | [{"@value":"(+)-validamycin A","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | Added 10 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 273,231 | consensus_match | prefLabel | [{"@value":"Validamycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Validamycin A","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"c… | cas=37248-47-8; cc_chebi_agreed_name='Validamycin A'; object_uuid=fo-79989dc5f72cbc27 |
| 273,232 | consensus_match | altLabel | [{"@value":"(+)-validamycin A","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | [{"@value":"(+)-validamycin A","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | cas=37248-47-8; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-79989dc5f72cbc27 |
| 273,233 | consensus_match | altLabel | [{"@value":"(+)-validamycin A","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | [{"@value":"(+)-validamycin A","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | group_key=validamycin||dimension=Environmental > media=Water > water_body=Surface water; cas=37248-47-8; added Common Chemistry CAS names as altLabel: 1,5,6-Trideoxy-4-<em>O</em>-β-<span class="text-smallcaps">D</smallcap>-glucopyranosyl-5-(hydroxymethyl)-1-[[(1<em>S</em>,4<em>R</em>,5<em>S</em>,6<em>S</em>)-4,5,6-trihydroxy-3-(hydroxymethyl)-2-cyclohexen-1-yl]amino]-<smallcap>D</span>-<em>chiro</em>-inositol, <span class="text-smallcaps">D</smallcap>-<em>chiro</em>-Inositol, 1,5,6-trideoxy-4-<em>O</em>-β-<smallcap>D</span>-glucopyranosyl-5-(hydroxymethyl)-1-[[(1<em>S</em>,4<em>R</em>,5<em>S</em>,6<em>S</em>)-4,5,6-trihydroxy-3-(hydroxymethyl)-2-cyclohexen-1-yl]amino]-, <span class="text-smallcaps">D</smallcap>-<em>chiro</em>-Inositol, 1,5,6-trideoxy-4-<em>O</em>-β-<smallcap>D</span>-glucopyranosyl-5-(hydroxymethyl)-1-[[4,5,6-trihydroxy-3-(hydroxymethyl)-2-cyclohexen-1-yl]amino]-, [1<em>S</em>-(1α,4α,5β,6α)]-, Cepex 10SL, Jinggang, Jinggangmycin, Jinggangmycin A; object_uuid=fo-79989dc5f72cbc27 |
| 273,234 | consensus_match | cas_match_labels | — | {"37248-47-8":"exactMatch"} | group_key=validamycin||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'pubchem']; cas_sources={'37248-47-8': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-79989dc5f72cbc27: {'37248-47-8': 'exactMatch'} |
| 277,207 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H35NO13… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H35NO13… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(1R,2R,3S,4S,6R)-2,3-dihydroxy-6-(hydroxymethyl)-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}cyclohexyl beta-D-glucopyranoside' |
| 283,868 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H35NO13… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H35NO13… | rdkit_post_consensus from 'OCC1=C[C@H](N[C@H]2C[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,713 | dedupe_altlabels | altLabel | [{"@value":"(+)-validamycin A","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | [{"@value":"(+)-validamycin A","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | Deduplicated altLabel values and removed entries matching prefLabel |
| 365,534 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/c9399a97-de63-… | associations resolved on the elementary layer |
| 391,556 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H35NO13… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H35NO13… | typed the way the ontology types it |
| 399,633 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 399,634 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_33286","rdfs:label":"agrochemical","http://www.w3.org/2004/02/skos/core#d… | the substance's answer, copied onto its flow |
| 399,635 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H35NO13… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H35NO13… | the substance's answer, copied onto its flow |
PROV-O trail
24 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/13465 | prefLabel | ef:agent/bootstrap_labels | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v0 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v1 |
| ef:activity/change/20260820T1416470405690000/13466 | name | ef:agent/bootstrap_labels | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v1 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v2 |
| ef:activity/change/20260820T1416470405690000/13467 | synonyms | ef:agent/bootstrap_labels | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v2 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v3 |
| ef:activity/change/20260820T1416470405690000/168976 | context | ef:agent/default_context_mapping | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v3 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v4 |
| ef:activity/change/20260820T1416470405690000/168977 | context_iri | ef:agent/default_context_mapping | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v4 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v5 |
| ef:activity/change/20260820T1416470405690000/217793 | unit_iri | ef:agent/unit_normalization | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v5 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v6 |
| ef:activity/change/20260820T1416470405690000/224218 | prefLabel | ef:agent/normalize_name_case | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v6 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v7 |
| ef:activity/change/20260820T1416470405690000/239945 | properties | ef:agent/enrich_references | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v7 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v8 |
| ef:activity/change/20260820T1416470405690000/239946 | skos_definition | ef:agent/enrich_references | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v8 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v9 |
| ef:activity/change/20260820T1416470405690000/239947 | references | ef:agent/enrich_references | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v9 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v10 |
| ef:activity/change/20260820T1416470405690000/251995 | properties | ef:agent/rdkit_pre_consensus | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v10 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v11 |
| ef:activity/change/20260820T1416470405690000/256221 | altLabel | ef:agent/chebi_altlabels | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v11 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v12 |
| ef:activity/change/20260820T1416470405690000/273231 | prefLabel | ef:agent/consensus_match | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v12 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v13 |
| ef:activity/change/20260820T1416470405690000/273232 | altLabel | ef:agent/consensus_match | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v13 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v14 |
| ef:activity/change/20260820T1416470405690000/273233 | altLabel | ef:agent/consensus_match | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v14 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v15 |
| ef:activity/change/20260820T1416470405690000/273234 | cas_match_labels | ef:agent/consensus_match | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v15 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v16 |
| ef:activity/change/20260820T1416470405690000/277207 | properties | ef:agent/opsin_iupac | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v16 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v17 |
| ef:activity/change/20260820T1416470405690000/283868 | properties | ef:agent/rdkit_post_consensus | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v17 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v18 |
| ef:activity/change/20260820T1416470405690000/292713 | altLabel | ef:agent/dedupe_altlabels | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v18 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v19 |
| ef:activity/change/20260820T1416470405690000/365534 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v19 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v20 |
| ef:activity/change/20260820T1416470405690000/391556 | properties | ef:agent/normalise_property_values | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v20 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v21 |
| ef:activity/change/20260820T1416470405690000/399633 | types | ef:agent/link_flows_to_their_substance | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v21 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v22 |
| ef:activity/change/20260820T1416470405690000/399634 | roles | ef:agent/link_flows_to_their_substance | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v22 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v23 |
| ef:activity/change/20260820T1416470405690000/399635 | properties | ef:agent/link_flows_to_their_substance | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v23 | ef:flow/c9399a97-de63-483a-849a-c874bf21cb49/v24 |