Arginine
Everything that changed this flow. Back to the flow
ccb95dd2-c143-4ece-8714-5931f0a6ff81
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'A 0526' (grade code), 'NSC 206269' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=arginine||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'74-79-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-54101824a69e50fd: {'74-79-3': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['74-79-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16467']; candidate_pubchem_cids=[232, 6322, 81609, 1549073, 5231987, 5246487]; selected_pubchem_cids=[6322]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 19,400 | bootstrap_labels | prefLabel | — | [{"@value":"arginine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | Bootstrapped prefLabel from legacy name field |
| 19,401 | bootstrap_labels | name | arginine | — | Purged legacy name field to enforce prefLabel usage |
| 19,402 | bootstrap_labels | synonyms | ["organic","arginine"] | [] | Removed legacy synonyms field in favor of structured labels |
| 171,046 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 171,047 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-agri | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 219,655 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,499 | normalize_name_case | prefLabel | [{"@value":"arginine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | [{"@value":"Arginine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 245,215 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H14N4O2"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 245,216 | enrich_references | skos_definition | — | [{"@value":"An L-α-amino acid that is the L-isomer of arginine.","@language":"en","provenance":{"prov:wasGeneratedBy":"… | Merged ChEBI/PubChem definitions into skos:definition |
| 245,217 | enrich_references | references | [] | [{"@id":"drugcentral:1549","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['74-79-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16467']; candidate_pubchem_cids=[232, 6322, 81609, 1549073, 5231987, 5246487]; selected_pubchem_cids=[6322]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,514 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H14N4O2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H14N4O2"… | rdkit_pre_consensus from 'C(CC(C(=O)O)N)CN=C(N)N'; added: inchi2d_string, monoisotopic_mass |
| 256,899 | chebi_altlabels | altLabel | [] | [{"@value":"(2S)-2-amino-5-(carbamimidamido)pentanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_alt… | Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 263,925 | consensus_match | altLabel | [{"@value":"(2S)-2-amino-5-(carbamimidamido)pentanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_alt… | [{"@value":"(2S)-2-amino-5-(carbamimidamido)pentanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_alt… | group_key=arginine||dimension=Environmental > media=Air > strata=Unknown; cas=74-79-3; added Common Chemistry CAS names as altLabel: (2S)-2-Amino-5-(diaminomethylideneamino)pentanoic acid, (<em>S</em>)-2-Amino-5-[(aminoiminomethyl)amino]pentanoic acid, 102: PN: WO2022204151 SEQID: 102 claimed protein, 117: PN: WO2021061872 SEQID: 117 claimed protein, 11: PN: WO2022235295 SEQID: 117 claimed protein, 14: PN: US20240293544 SEQID: 117 claimed protein, 381: PN: WO2022056313 SEQID: 385 claimed protein, 393: PN: WO2023172654 SEQID: 395 claimed sequence, 3: PN: WO2022269549 PAGE: 98 claimed sequence, 42: PN: KR20200014684 SEQID: 105 claimed sequence, 42: PN: WO2020027640 SEQID: 105 claimed protein, 42: PN: WO2022204326 SEQID: 76 claimed protein, 87: PN: WO2022010798 SEQID: 89 claimed protein, <span class="text-smallcaps">L</span>-Norvaline, 5-[(aminoiminomethyl)amino]-, <span class="text-smallcaps">L</span>-Ornithine, <em>N</em><sup>5</sup>-(aminoiminomethyl)-, <span class="text-smallcaps">L</span>-α-Amino-δ-guanidinovaleric acid, A 0526, Arginine, <span class="text-smallcaps">L</span>-, L-arginine C Grade, MeSH ID: D001120, NSC 206269, Pentanoic acid, 2-amino-5-[(aminoiminomethyl)amino]-, (<em>S</em>)-; object_uuid=fo-54101824a69e50fd |
| 263,926 | consensus_match | cas_match_labels | — | {"74-79-3":"exactMatch"} | group_key=arginine||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'74-79-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-54101824a69e50fd: {'74-79-3': 'exactMatch'} |
| 278,730 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H14N4O2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H14N4O2"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Arginine' |
| 285,513 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H14N4O2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H14N4O2"… | rdkit_post_consensus from 'N=C(N)NCCC[C@H](N)C(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 291,156 | strip_catalogue_altlabels | altLabel | [{"@value":"(2S)-2-amino-5-(carbamimidamido)pentanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_alt… | [{"@value":"(2S)-2-amino-5-(carbamimidamido)pentanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_alt… | Removed 2 catalogue altLabel value(s): 'A 0526' (grade code), 'NSC 206269' (registry code) |
| 366,549 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/ccb95dd2-c143-… | associations resolved on the elementary layer |
| 393,098 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H14N4O2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H14N4O2"… | typed the way the ontology types it |
| 401,880 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 401,881 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H14N4O2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H14N4O2"… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/19400 | prefLabel | ef:agent/bootstrap_labels | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v0 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v1 |
| ef:activity/change/20260821T1554374006150000/19401 | name | ef:agent/bootstrap_labels | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v1 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v2 |
| ef:activity/change/20260821T1554374006150000/19402 | synonyms | ef:agent/bootstrap_labels | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v2 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v3 |
| ef:activity/change/20260821T1554374006150000/171046 | context | ef:agent/default_context_mapping | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v3 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v4 |
| ef:activity/change/20260821T1554374006150000/171047 | context_iri | ef:agent/default_context_mapping | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v4 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v5 |
| ef:activity/change/20260821T1554374006150000/219655 | unit_iri | ef:agent/unit_normalization | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v5 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v6 |
| ef:activity/change/20260821T1554374006150000/225499 | prefLabel | ef:agent/normalize_name_case | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v6 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v7 |
| ef:activity/change/20260821T1554374006150000/245215 | properties | ef:agent/enrich_references | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v7 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v8 |
| ef:activity/change/20260821T1554374006150000/245216 | skos_definition | ef:agent/enrich_references | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v8 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v9 |
| ef:activity/change/20260821T1554374006150000/245217 | references | ef:agent/enrich_references | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v9 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v10 |
| ef:activity/change/20260821T1554374006150000/253514 | properties | ef:agent/rdkit_pre_consensus | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v10 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v11 |
| ef:activity/change/20260821T1554374006150000/256899 | altLabel | ef:agent/chebi_altlabels | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v11 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v12 |
| ef:activity/change/20260821T1554374006150000/263925 | altLabel | ef:agent/consensus_match | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v12 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v13 |
| ef:activity/change/20260821T1554374006150000/263926 | cas_match_labels | ef:agent/consensus_match | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v13 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v14 |
| ef:activity/change/20260821T1554374006150000/278730 | properties | ef:agent/opsin_iupac | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v14 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v15 |
| ef:activity/change/20260821T1554374006150000/285513 | properties | ef:agent/rdkit_post_consensus | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v15 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v16 |
| ef:activity/change/20260821T1554374006150000/291156 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v16 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v17 |
| ef:activity/change/20260821T1554374006150000/366549 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v17 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v18 |
| ef:activity/change/20260821T1554374006150000/393098 | properties | ef:agent/normalise_property_values | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v18 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v19 |
| ef:activity/change/20260821T1554374006150000/401880 | types | ef:agent/link_flows_to_their_substance | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v19 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v20 |
| ef:activity/change/20260821T1554374006150000/401881 | properties | ef:agent/link_flows_to_their_substance | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v20 | ef:flow/ccb95dd2-c143-4ece-8714-5931f0a6ff81/v21 |