Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 6 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus, withhold_ambiguous_mass typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'C.I. 77489' (registry code)
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=1345-25-1; cc_chebi_agreed_name='Ferrous oxide'; object_uuid=fo-b08d77c3b249fc81
cas_match_labels 1 consensus_match group_key=ironoxide||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory']; cas_sources={'1345-25-1': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-b08d77c3b249fc81: {'1345-25-1': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['1345-25-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_50820']; candidate_pubchem_cids=[14945, 445609, 449809]; selected_pubchem_cids=[14945]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

23
# Step Field From To Why
21,041 bootstrap_labels prefLabel [{"@value":"iron oxide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… Bootstrapped prefLabel from legacy name field
21,042 bootstrap_labels name iron oxide Purged legacy name field to enforce prefLabel usage
21,043 bootstrap_labels synonyms ["inorganic","ironoxide"] [] Removed legacy synonyms field in favor of structured labels
171,400 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
171,401 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-aicrhe Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
220,125 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,866 normalize_name_case prefLabel [{"@value":"iron oxide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… [{"@value":"Iron Oxide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
246,526 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["FeO"],"att… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
246,527 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
246,528 enrich_references references [] [{"@id":"gmelin:13590","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… Added references with provenance; cas_numbers=['1345-25-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_50820']; candidate_pubchem_cids=[14945, 445609, 449809]; selected_pubchem_cids=[14945]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,908 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["FeO"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["FeO"],"att… rdkit_pre_consensus from 'O=[Fe]'; added: monoisotopic_mass
257,062 chebi_altlabels altLabel [] [{"@value":"Eisen(II)-oxid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
268,057 consensus_match prefLabel [{"@value":"Iron Oxide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… [{"@value":"Ferrous oxide","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"c… cas=1345-25-1; cc_chebi_agreed_name='Ferrous oxide'; object_uuid=fo-b08d77c3b249fc81
268,058 consensus_match altLabel [{"@value":"Eisen(II)-oxid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… [{"@value":"Eisen(II)-oxid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… cas=1345-25-1; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-b08d77c3b249fc81
268,059 consensus_match altLabel [{"@value":"Eisen(II)-oxid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… [{"@value":"Eisen(II)-oxid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… group_key=ironoxide||dimension=Environmental > media=Ground > geography=Agricultural; cas=1345-25-1; added Common Chemistry CAS names as altLabel: C.I. 77489, Iron oxide (FeO); object_uuid=fo-b08d77c3b249fc81
268,060 consensus_match cas_match_labels {"1345-25-1":"exactMatch"} group_key=ironoxide||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory']; cas_sources={'1345-25-1': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-b08d77c3b249fc81: {'1345-25-1': 'exactMatch'}
279,108 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["FeO"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["FeO"],"att… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Ferrous oxide'
285,957 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["FeO"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["FeO"],"att… rdkit_post_consensus from '[Fe+2].[O-2]'; added: inchi2d_key_string; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass
287,210 withhold_ambiguous_mass properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["FeO"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["FeO"],"att… withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it
291,431 strip_catalogue_altlabels altLabel [{"@value":"Eisen(II)-oxid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… [{"@value":"Eisen(II)-oxid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… Removed 1 catalogue altLabel value(s): 'C.I. 77489' (registry code)
366,746 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/cd52691d-0f09-… associations resolved on the elementary layer
393,507 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["FeO"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["FeO"],"att… typed the way the ontology types it
402,499 link_flows_to_their_substance types ["https://w3id.org/chemrof/ChemicalSalt"] the substance's answer, copied onto its flow

PROV-O trail

23 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/21041 prefLabel ef:agent/bootstrap_labels ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v0 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v1
ef:activity/change/20260820T0738569779880000/21042 name ef:agent/bootstrap_labels ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v1 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v2
ef:activity/change/20260820T0738569779880000/21043 synonyms ef:agent/bootstrap_labels ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v2 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v3
ef:activity/change/20260820T0738569779880000/171400 context ef:agent/default_context_mapping ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v3 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v4
ef:activity/change/20260820T0738569779880000/171401 context_iri ef:agent/default_context_mapping ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v4 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v5
ef:activity/change/20260820T0738569779880000/220125 unit_iri ef:agent/unit_normalization ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v5 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v6
ef:activity/change/20260820T0738569779880000/225866 prefLabel ef:agent/normalize_name_case ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v6 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v7
ef:activity/change/20260820T0738569779880000/246526 properties ef:agent/enrich_references ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v7 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v8
ef:activity/change/20260820T0738569779880000/246527 skos_definition ef:agent/enrich_references ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v8 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v9
ef:activity/change/20260820T0738569779880000/246528 references ef:agent/enrich_references ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v9 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v10
ef:activity/change/20260820T0738569779880000/253908 properties ef:agent/rdkit_pre_consensus ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v10 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v11
ef:activity/change/20260820T0738569779880000/257062 altLabel ef:agent/chebi_altlabels ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v11 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v12
ef:activity/change/20260820T0738569779880000/268057 prefLabel ef:agent/consensus_match ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v12 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v13
ef:activity/change/20260820T0738569779880000/268058 altLabel ef:agent/consensus_match ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v13 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v14
ef:activity/change/20260820T0738569779880000/268059 altLabel ef:agent/consensus_match ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v14 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v15
ef:activity/change/20260820T0738569779880000/268060 cas_match_labels ef:agent/consensus_match ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v15 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v16
ef:activity/change/20260820T0738569779880000/279108 properties ef:agent/opsin_iupac ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v16 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v17
ef:activity/change/20260820T0738569779880000/285957 properties ef:agent/rdkit_post_consensus ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v17 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v18
ef:activity/change/20260820T0738569779880000/287210 properties ef:agent/withhold_ambiguous_mass ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v18 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v19
ef:activity/change/20260820T0738569779880000/291431 altLabel ef:agent/strip_catalogue_altlabels ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v19 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v20
ef:activity/change/20260820T0738569779880000/366746 concept_associations ef:agent/carry_associations_onto_flows ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v20 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v21
ef:activity/change/20260820T0738569779880000/393507 properties ef:agent/normalise_property_values ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v21 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v22
ef:activity/change/20260820T0738569779880000/402499 types ef:agent/link_flows_to_their_substance ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v22 ef:flow/cd52691d-0f09-4892-998d-2d29436639d9/v23

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