Oxytetracycline
Everything that changed this flow. Back to the flow
cef9c9cd-3812-44ea-88a9-4bdf4de67dc5
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus, withhold_ambiguous_mass | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 5 catalogue altLabel value(s): 'LA 200' (grade code), 'NSC 9169' (registry code), 'Oxiter 200' (trade name), 'Oxysentin 100' (trade name), 'TM 50' (grade code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=oxytetracycline||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'79-57-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-c2f9ac26736e4e2e: {'79-57-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| ec_numbers | 1 | ec_cross_check | Resolved from EC-inventory: 201-212-8 from CAS 79-57-2 |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['79-57-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_27701']; candidate_pubchem_cids=[54675779, 54682550, 54686003, 54692966, 54693027, 54705189, 54710064, 54710380, 54726496, 57004235, 92222310, 118984634, 129010396, 132452761, 134715710, 146156145]; selected_pubchem_cids=[54675779]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 19,963 | bootstrap_labels | prefLabel | — | [{"@value":"oxytetracycline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… | Bootstrapped prefLabel from legacy name field |
| 19,964 | bootstrap_labels | name | oxytetracycline | — | Purged legacy name field to enforce prefLabel usage |
| 19,965 | bootstrap_labels | synonyms | ["(2Z,4S,4aR,5S,5aR,6S,12aS)-2-[amino(hydroxy)methylidene]-4-(dimethylamino)-5,6,10,11,12a-pentahydroxy-6-methyl-4,4a,5… | [] | Removed legacy synonyms field in favor of structured labels |
| 172,256 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 172,257 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 219,822 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,625 | normalize_name_case | prefLabel | [{"@value":"oxytetracycline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… | [{"@value":"Oxytetracycline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 227,047 | ec_cross_check | ec_numbers | [] | ["201-212-8"] | Resolved from EC-inventory: 201-212-8 from CAS 79-57-2 |
| 245,686 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 245,687 | enrich_references | skos_definition | — | [{"@value":"A tetracycline used for treatment of infections caused by a variety of Gram positive and Gram negative micr… | Merged ChEBI/PubChem definitions into skos:definition |
| 245,688 | enrich_references | references | [] | [{"@id":"beilstein:2686362","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['79-57-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_27701']; candidate_pubchem_cids=[54675779, 54682550, 54686003, 54692966, 54693027, 54705189, 54710064, 54710380, 54726496, 57004235, 92222310, 118984634, 129010396, 132452761, 134715710, 146156145]; selected_pubchem_cids=[54675779]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,651 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… | rdkit_pre_consensus from 'CC1(C2C(C3C(C(=O)C(=C(C3(C(=O)C2=C(C4=C1C=CC=C4O)O)O)O)C(=O)N)N(C)C)O)O'; added: inchi2d_string |
| 256,968 | chebi_altlabels | altLabel | [] | [{"@value":"(4S,4aR,5S,5aR,6S,12aS)-4-(dimethylamino)-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,… | Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 270,272 | consensus_match | altLabel | [{"@value":"(4S,4aR,5S,5aR,6S,12aS)-4-(dimethylamino)-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,… | [{"@value":"(4S,4aR,5S,5aR,6S,12aS)-4-(dimethylamino)-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,… | group_key=oxytetracycline||dimension=Environmental > media=Water > water_body=Long-term; cas=79-57-2; added Common Chemistry CAS names as altLabel: (4<em>S</em>,4a<em>R</em>,5<em>S</em>,5a<em>R</em>,6<em>S</em>,12a<em>S</em>)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-2-naphthacenecarboxamide, 2-Naphthacenecarboxamide, 4-(dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-, 2-Naphthacenecarboxamide, 4-(dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-, (4<em>S</em>,4a<em>R</em>,5<em>S</em>,5a<em>R</em>,6<em>S</em>,12a<em>S</em>)-, 2-Naphthacenecarboxamide, 4-(dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-, [4<em>S</em>-(4α,4aα,5α,5aα,6β,12aα)]-, 4-Dimethylamino-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-4,4a,5,5a-tetrahydrotetracene-2-carboxamide, Abbocin, Adamycin, Antibiotic TM 25, Berkmycen, Biostat PA, Clinimycin, Dabicycline, Erfamycin, Fanterrin, Geomycin, Geomycin (Streptomyces vimosus), Geotilin, Imperacin, LA 200, Lenocycline, Liquamycin, Liquamycin LA 200, Macocyn, MeSH ID: D010118, Mycoshield TMQTHC 20, NSC 9169, OTC, OTC (antibiotic), OXTC, Oksisyklin, Oxatets, Oxiter 200, Oxitetracyclin, Oxy-Kesso-Tetra, Oxycline, Oxydon, Oxyject LA, Oxylim, Oxymed 50, Oxymycin, Oxymykoin, Oxypam, Oxysentin 100, Oxyterracyne, Oxytetral, Proteroxyna, Riomitsin, Ryomycin, Solkaciclina, Stecsolin, Stevacin, Stevasin, TM 50, Tarocyn, Tarosin, Teravit, Terrafungine, Terralon LA, Terramycin, Terramycin Q 50, Tetran, Tormicina, Unimycin, Ursocyclin, Ursocycline, Vendarcin; object_uuid=fo-c2f9ac26736e4e2e |
| 270,273 | consensus_match | cas_match_labels | — | {"79-57-2":"exactMatch"} | group_key=oxytetracycline||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'79-57-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-c2f9ac26736e4e2e: {'79-57-2': 'exactMatch'} |
| 285,668 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… | rdkit_post_consensus from 'CC1(C2C(C3C(C(=O)C(=C(C3(C(=O)C2=C(C4=C1C=CC=C4O)O)O)O)C(=O)N)N(C)C)O)O'; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 287,165 | withhold_ambiguous_mass | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… | withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it |
| 291,242 | strip_catalogue_altlabels | altLabel | [{"@value":"(4S,4aR,5S,5aR,6S,12aS)-4-(dimethylamino)-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,… | [{"@value":"(4S,4aR,5S,5aR,6S,12aS)-4-(dimethylamino)-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,… | Removed 5 catalogue altLabel value(s): 'LA 200' (grade code), 'NSC 9169' (registry code), 'Oxiter 200' (trade name), 'Oxysentin 100' (trade name), 'TM 50' (grade code) |
| 367,152 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/cef9c9cd-3812-… | associations resolved on the elementary layer |
| 393,240 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… | typed the way the ontology types it |
| 402,106 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 402,107 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/19963 | prefLabel | ef:agent/bootstrap_labels | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v0 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v1 |
| ef:activity/change/20260822T0600486828500000/19964 | name | ef:agent/bootstrap_labels | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v1 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v2 |
| ef:activity/change/20260822T0600486828500000/19965 | synonyms | ef:agent/bootstrap_labels | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v2 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v3 |
| ef:activity/change/20260822T0600486828500000/172256 | context | ef:agent/default_context_mapping | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v3 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v4 |
| ef:activity/change/20260822T0600486828500000/172257 | context_iri | ef:agent/default_context_mapping | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v4 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v5 |
| ef:activity/change/20260822T0600486828500000/219822 | unit_iri | ef:agent/unit_normalization | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v5 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v6 |
| ef:activity/change/20260822T0600486828500000/225625 | prefLabel | ef:agent/normalize_name_case | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v6 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v7 |
| ef:activity/change/20260822T0600486828500000/227047 | ec_numbers | ef:agent/ec_cross_check | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v7 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v8 |
| ef:activity/change/20260822T0600486828500000/245686 | properties | ef:agent/enrich_references | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v8 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v9 |
| ef:activity/change/20260822T0600486828500000/245687 | skos_definition | ef:agent/enrich_references | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v9 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v10 |
| ef:activity/change/20260822T0600486828500000/245688 | references | ef:agent/enrich_references | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v10 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v11 |
| ef:activity/change/20260822T0600486828500000/253651 | properties | ef:agent/rdkit_pre_consensus | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v11 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v12 |
| ef:activity/change/20260822T0600486828500000/256968 | altLabel | ef:agent/chebi_altlabels | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v12 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v13 |
| ef:activity/change/20260822T0600486828500000/270272 | altLabel | ef:agent/consensus_match | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v13 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v14 |
| ef:activity/change/20260822T0600486828500000/270273 | cas_match_labels | ef:agent/consensus_match | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v14 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v15 |
| ef:activity/change/20260822T0600486828500000/285668 | properties | ef:agent/rdkit_post_consensus | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v15 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v16 |
| ef:activity/change/20260822T0600486828500000/287165 | properties | ef:agent/withhold_ambiguous_mass | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v16 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v17 |
| ef:activity/change/20260822T0600486828500000/291242 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v17 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v18 |
| ef:activity/change/20260822T0600486828500000/367152 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v18 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v19 |
| ef:activity/change/20260822T0600486828500000/393240 | properties | ef:agent/normalise_property_values | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v19 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v20 |
| ef:activity/change/20260822T0600486828500000/402106 | types | ef:agent/link_flows_to_their_substance | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v20 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v21 |
| ef:activity/change/20260822T0600486828500000/402107 | properties | ef:agent/link_flows_to_their_substance | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v21 | ef:flow/cef9c9cd-3812-44ea-88a9-4bdf4de67dc5/v22 |