Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, link_flows_to_their_substance, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus the substance's answer, copied onto its flow
altLabel 3 chebi_altlabels, consensus_match, dedupe_altlabels Deduplicated altLabel values and removed entries matching prefLabel
cas_match_labels 1 consensus_match group_key=(e)-7,11-dimethyl-3-methylenedodeca-1,6,10-triene||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'18794-84-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-2fe0555075769261: {'18794-84-8': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
prefLabel 1 bootstrap_labels Bootstrapped prefLabel from legacy name field
references 1 enrich_references Added references with provenance; cas_numbers=['18794-84-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_10418']; candidate_pubchem_cids=[10407, 5281517, 15228937, 53654616]; selected_pubchem_cids=[5281517]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

19
# Step Field From To Why
16,121 bootstrap_labels prefLabel [{"@value":"(e)-7,11-dimethyl-3-methylenedodeca-1,6,10-triene","@language":"en","source":{"prov:wasGeneratedBy":"bootst… Bootstrapped prefLabel from legacy name field
16,122 bootstrap_labels name (e)-7,11-dimethyl-3-methylenedodeca-1,6,10-triene Purged legacy name field to enforce prefLabel usage
16,123 bootstrap_labels synonyms ["organic","(e)-7,11-dimethyl-3-methylenedodeca-1,6,10-triene","trans-ã?-farnesene"] [] Removed legacy synonyms field in favor of structured labels
173,150 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
173,151 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
218,640 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
242,363 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H24"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
242,364 enrich_references skos_definition [{"@value":"A β-farnesene in which the double bond at position 6-7 has E configuration. It is the major or sole alarm p… Merged ChEBI/PubChem definitions into skos:definition
242,365 enrich_references references [] [{"@id":"agr:IND23333888","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"c… Added references with provenance; cas_numbers=['18794-84-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_10418']; candidate_pubchem_cids=[10407, 5281517, 15228937, 53654616]; selected_pubchem_cids=[5281517]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
252,702 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H24"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H24"],"… rdkit_pre_consensus from 'C=CC(=C)CC/C=C(C)CCC=C(C)C'; added: inchi2d_string, monoisotopic_mass
256,530 chebi_altlabels altLabel [] [{"@value":"(6E)-7,11-dimethyl-3-methylene-1,6,10-dodecatriene","@language":"en","source":{"prov:wasGeneratedBy":"chebi… Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
257,858 consensus_match altLabel [{"@value":"(6E)-7,11-dimethyl-3-methylene-1,6,10-dodecatriene","@language":"en","source":{"prov:wasGeneratedBy":"chebi… [{"@value":"(6E)-7,11-dimethyl-3-methylene-1,6,10-dodecatriene","@language":"en","source":{"prov:wasGeneratedBy":"chebi… group_key=(e)-7,11-dimethyl-3-methylenedodeca-1,6,10-triene||dimension=Environmental > media=Air > strata=Unknown; cas=18794-84-8; added Common Chemistry CAS names as altLabel: (6E)-7,11-Dimethyl-3-methylidenedodeca-1,6,10-triene, (<em>E</em>)-7,11-Dimethyl-3-methylene-1,6,10-dodecatriene, (<em>E</em>)-β-Farnesene, 1,6,10-Dodecatriene, 7,11-dimethyl-3-methylene-, (6<em>E</em>)-, 1,6,10-Dodecatriene, 7,11-dimethyl-3-methylene-, (<em>E</em>)-, <em>trans</em>-β-Farnesene, Biofene, β-Farnesene; object_uuid=fo-2fe0555075769261
257,859 consensus_match cas_match_labels {"18794-84-8":"exactMatch"} group_key=(e)-7,11-dimethyl-3-methylenedodeca-1,6,10-triene||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'18794-84-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-2fe0555075769261: {'18794-84-8': 'exactMatch'}
284,634 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H24"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H24"],"… rdkit_post_consensus from 'C=CC(=C)CC/C=C(C)CCC=C(C)C'; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass
292,890 dedupe_altlabels altLabel [{"@value":"(6E)-7,11-dimethyl-3-methylene-1,6,10-dodecatriene","@language":"en","source":{"prov:wasGeneratedBy":"chebi… [{"@value":"(6E)-7,11-dimethyl-3-methylene-1,6,10-dodecatriene","@language":"en","source":{"prov:wasGeneratedBy":"chebi… Deduplicated altLabel values and removed entries matching prefLabel
367,619 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/d0391e7d-85bf-… associations resolved on the elementary layer
392,277 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H24"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H24"],"… typed the way the ontology types it
400,647 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
400,648 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H24"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H24"],"… the substance's answer, copied onto its flow

PROV-O trail

19 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/16121 prefLabel ef:agent/bootstrap_labels ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v0 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v1
ef:activity/change/20260820T0738569779880000/16122 name ef:agent/bootstrap_labels ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v1 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v2
ef:activity/change/20260820T0738569779880000/16123 synonyms ef:agent/bootstrap_labels ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v2 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v3
ef:activity/change/20260820T0738569779880000/173150 context ef:agent/default_context_mapping ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v3 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v4
ef:activity/change/20260820T0738569779880000/173151 context_iri ef:agent/default_context_mapping ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v4 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v5
ef:activity/change/20260820T0738569779880000/218640 unit_iri ef:agent/unit_normalization ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v5 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v6
ef:activity/change/20260820T0738569779880000/242363 properties ef:agent/enrich_references ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v6 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v7
ef:activity/change/20260820T0738569779880000/242364 skos_definition ef:agent/enrich_references ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v7 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v8
ef:activity/change/20260820T0738569779880000/242365 references ef:agent/enrich_references ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v8 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v9
ef:activity/change/20260820T0738569779880000/252702 properties ef:agent/rdkit_pre_consensus ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v9 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v10
ef:activity/change/20260820T0738569779880000/256530 altLabel ef:agent/chebi_altlabels ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v10 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v11
ef:activity/change/20260820T0738569779880000/257858 altLabel ef:agent/consensus_match ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v11 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v12
ef:activity/change/20260820T0738569779880000/257859 cas_match_labels ef:agent/consensus_match ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v12 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v13
ef:activity/change/20260820T0738569779880000/284634 properties ef:agent/rdkit_post_consensus ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v13 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v14
ef:activity/change/20260820T0738569779880000/292890 altLabel ef:agent/dedupe_altlabels ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v14 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v15
ef:activity/change/20260820T0738569779880000/367619 concept_associations ef:agent/carry_associations_onto_flows ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v15 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v16
ef:activity/change/20260820T0738569779880000/392277 properties ef:agent/normalise_property_values ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v16 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v17
ef:activity/change/20260820T0738569779880000/400647 types ef:agent/link_flows_to_their_substance ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v17 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v18
ef:activity/change/20260820T0738569779880000/400648 properties ef:agent/link_flows_to_their_substance ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v18 ef:flow/d0391e7d-85bf-4c6e-a4c8-53e585c48abf/v19

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