Bilanafos
Everything that changed this flow. Back to the flow
d10116e0-4bb2-4d12-97a1-f54318d62f6f
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 7 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus, withhold_ambiguous_mass | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=bilanafos||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'pubchem']; cas_sources={'35597-43-4': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-36a873d2c655b814: {'35597-43-4': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['35597-43-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_3088']; candidate_pubchem_cids=[116733, 5462314, 13852341, 13852342, 13852343, 54451849, 85790118, 133126492]; selected_pubchem_cids=[5462314]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 10,439 | bootstrap_labels | prefLabel | — | [{"@value":"bilanafos","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 10,440 | bootstrap_labels | name | bilanafos | — | Purged legacy name field to enforce prefLabel usage |
| 10,441 | bootstrap_labels | synonyms | ["(2S)-2-[[(2S)-2-[[(2S)-2-amino-4-[hydroxy(methyl)phosphoryl]butanoyl]amino]propanoyl]amino]propanoic acid","2-Amino-4… | [] | Removed legacy synonyms field in favor of structured labels |
| 173,638 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Non-agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 173,639 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-noag | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 216,804 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,537 | normalize_name_case | prefLabel | [{"@value":"bilanafos","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Bilanafos","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 237,126 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 237,127 | enrich_references | skos_definition | — | [{"@value":"A tripeptide comprising one L-phosphinothricyl and two L-alanyl units joined in sequence.","@language":"en"… | Merged ChEBI/PubChem definitions into skos:definition |
| 237,128 | enrich_references | references | [] | [{"@id":"bpdb:1169","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"consens… | Added references with provenance; cas_numbers=['35597-43-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_3088']; candidate_pubchem_cids=[116733, 5462314, 13852341, 13852342, 13852343, 54451849, 85790118, 133126492]; selected_pubchem_cids=[5462314]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,171 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | rdkit_pre_consensus from 'CC(C(=O)NC(C)C(=O)O)NC(=O)C(CCP(=O)(C)O)N'; added: inchi2d_string, monoisotopic_mass |
| 255,859 | chebi_altlabels | altLabel | [] | [{"@value":"(2S)-2-amino-4-(hydroxymethylphosphinyl)butanoyl-L-alanyl-L-alanine","@language":"en","source":{"prov:wasGe… | Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 264,276 | consensus_match | altLabel | [{"@value":"(2S)-2-amino-4-(hydroxymethylphosphinyl)butanoyl-L-alanyl-L-alanine","@language":"en","source":{"prov:wasGe… | [{"@value":"(2S)-2-amino-4-(hydroxymethylphosphinyl)butanoyl-L-alanyl-L-alanine","@language":"en","source":{"prov:wasGe… | group_key=bilanafos||dimension=Environmental > media=Ground > geography=Agricultural; cas=35597-43-4; added Common Chemistry CAS names as altLabel: <span class="text-smallcaps">L</smallcap>-Alanine, (2<em>S</em>)-2-amino-4-(hydroxymethylphosphinyl)butanoyl-<smallcap>L</span>-alanyl-, <span class="text-smallcaps">L</smallcap>-Alanine, 4-(hydroxymethylphosphinyl)-<smallcap>L</smallcap>-2-aminobutanoyl-<smallcap>L</span>-alanyl-, Bilanaphos, Herby, Phosphinothricin-alanyl-alanine, Phosphinothricyl-alanyl-alanine; object_uuid=fo-36a873d2c655b814 |
| 264,277 | consensus_match | cas_match_labels | — | {"35597-43-4":"exactMatch"} | group_key=bilanafos||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'pubchem']; cas_sources={'35597-43-4': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-36a873d2c655b814: {'35597-43-4': 'exactMatch'} |
| 276,351 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(2S)-2-amino-4-(hydroxymethylphosphinyl)butanoyl-L-alanyl-L-alanine' |
| 282,951 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | rdkit_post_consensus from 'C[C@H](NC(=O)[C@H](C)NC(=O)C(N)CC[PH](=O)CO)C(=O)O'; added: inchi2d_key_string; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 286,937 | withhold_ambiguous_mass | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it |
| 292,512 | dedupe_altlabels | altLabel | [{"@value":"(2S)-2-amino-4-(hydroxymethylphosphinyl)butanoyl-L-alanyl-L-alanine","@language":"en","source":{"prov:wasGe… | [{"@value":"(2S)-2-amino-4-(hydroxymethylphosphinyl)butanoyl-L-alanyl-L-alanine","@language":"en","source":{"prov:wasGe… | Deduplicated altLabel values and removed entries matching prefLabel |
| 367,843 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/d10116e0-4bb2-… | associations resolved on the elementary layer |
| 390,703 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | typed the way the ontology types it |
| 398,445 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 398,446 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H22N3O6… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/10439 | prefLabel | ef:agent/bootstrap_labels | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v0 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v1 |
| ef:activity/change/20260821T1554374006150000/10440 | name | ef:agent/bootstrap_labels | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v1 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v2 |
| ef:activity/change/20260821T1554374006150000/10441 | synonyms | ef:agent/bootstrap_labels | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v2 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v3 |
| ef:activity/change/20260821T1554374006150000/173638 | context | ef:agent/default_context_mapping | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v3 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v4 |
| ef:activity/change/20260821T1554374006150000/173639 | context_iri | ef:agent/default_context_mapping | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v4 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v5 |
| ef:activity/change/20260821T1554374006150000/216804 | unit_iri | ef:agent/unit_normalization | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v5 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v6 |
| ef:activity/change/20260821T1554374006150000/223537 | prefLabel | ef:agent/normalize_name_case | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v6 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v7 |
| ef:activity/change/20260821T1554374006150000/237126 | properties | ef:agent/enrich_references | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v7 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v8 |
| ef:activity/change/20260821T1554374006150000/237127 | skos_definition | ef:agent/enrich_references | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v8 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v9 |
| ef:activity/change/20260821T1554374006150000/237128 | references | ef:agent/enrich_references | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v9 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v10 |
| ef:activity/change/20260821T1554374006150000/251171 | properties | ef:agent/rdkit_pre_consensus | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v10 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v11 |
| ef:activity/change/20260821T1554374006150000/255859 | altLabel | ef:agent/chebi_altlabels | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v11 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v12 |
| ef:activity/change/20260821T1554374006150000/264276 | altLabel | ef:agent/consensus_match | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v12 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v13 |
| ef:activity/change/20260821T1554374006150000/264277 | cas_match_labels | ef:agent/consensus_match | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v13 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v14 |
| ef:activity/change/20260821T1554374006150000/276351 | properties | ef:agent/opsin_iupac | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v14 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v15 |
| ef:activity/change/20260821T1554374006150000/282951 | properties | ef:agent/rdkit_post_consensus | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v15 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v16 |
| ef:activity/change/20260821T1554374006150000/286937 | properties | ef:agent/withhold_ambiguous_mass | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v16 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v17 |
| ef:activity/change/20260821T1554374006150000/292512 | altLabel | ef:agent/dedupe_altlabels | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v17 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v18 |
| ef:activity/change/20260821T1554374006150000/367843 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v18 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v19 |
| ef:activity/change/20260821T1554374006150000/390703 | properties | ef:agent/normalise_property_values | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v19 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v20 |
| ef:activity/change/20260821T1554374006150000/398445 | types | ef:agent/link_flows_to_their_substance | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v20 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v21 |
| ef:activity/change/20260821T1554374006150000/398446 | properties | ef:agent/link_flows_to_their_substance | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v21 | ef:flow/d10116e0-4bb2-4d12-97a1-f54318d62f6f/v22 |