Ampicillin
Everything that changed this flow. Back to the flow
d48c9158-cd59-4c80-b6b2-f617e2a26523
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, link_flows_to_their_substance, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 5 catalogue altLabel value(s): 'AY 6108' (grade code), 'BRL 1341' (grade code), 'NSC 528986' (registry code), 'P 50' (grade code), 'Wy 5103' (grade code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=ampicillin||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'69-53-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f3320167c186dfbe: {'69-53-4': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['69-53-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28971']; candidate_pubchem_cids=[2174, 6249, 23565, 5311104, 6993157, 7048611, 12306112, 23663979]; selected_pubchem_cids=[6249]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 10,216 | bootstrap_labels | prefLabel | — | [{"@value":"ampicillin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Bootstrapped prefLabel from legacy name field |
| 10,217 | bootstrap_labels | name | ampicillin | — | Purged legacy name field to enforce prefLabel usage |
| 10,218 | bootstrap_labels | synonyms | ["(2S,5R,6R)-6-((R)-2-Amino-2-phenylacetamido)-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo(3.2.0)heptane-2-carboxylic acid",… | [] | Removed legacy synonyms field in favor of structured labels |
| 175,676 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 175,677 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 216,731 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,481 | normalize_name_case | prefLabel | [{"@value":"ampicillin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | [{"@value":"Ampicillin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 236,930 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O4… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 236,931 | enrich_references | skos_definition | — | [{"@value":"A penicillin in which the substituent at position 6 of the penam ring is a 2-amino-2-phenylacetamido group.… | Merged ChEBI/PubChem definitions into skos:definition |
| 236,932 | enrich_references | references | [] | [{"@id":"drugcentral:198","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"c… | Added references with provenance; cas_numbers=['69-53-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28971']; candidate_pubchem_cids=[2174, 6249, 23565, 5311104, 6993157, 7048611, 12306112, 23663979]; selected_pubchem_cids=[6249]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,121 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O4… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O4… | rdkit_pre_consensus from 'CC1(C(N2C(S1)C(C2=O)NC(=O)C(C3=CC=CC=C3)N)C(=O)O)C'; added: inchi2d_string, monoisotopic_mass |
| 255,832 | chebi_altlabels | altLabel | [] | [{"@value":"(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-… | Added 17 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 263,863 | consensus_match | altLabel | [{"@value":"(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-… | [{"@value":"(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-… | group_key=ampicillin||dimension=Environmental > media=Water > water_body=Surface water; cas=69-53-4; added Common Chemistry CAS names as altLabel: (-)-6-(2-Amino-2-phenylacetamido)-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, (2<em>S</em>,5<em>R</em>,6<em>R</em>)-6-[[(2<em>R</em>)-2-Amino-2-phenylacetyl]amino]-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, 4-Thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, 6-(2-amino-2-phenylacetamido)-3,3-dimethyl-7-oxo-, <span class="text-smallcaps">D</span>-(-)-, 4-Thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, 6-(<span class="text-smallcaps">D</span>-2-amino-2-phenylacetamido)-3,3-dimethyl-7-oxo-, 4-Thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, 6-[(aminophenylacetyl)amino]-3,3-dimethyl-7-oxo-, [2<em>S</em>-[2α,5α,6β(<em>S</em>*)]]-, 4-Thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, 6-[[(2<em>R</em>)-2-amino-2-phenylacetyl]amino]-3,3-dimethyl-7-oxo-, (2<em>S</em>,5<em>R</em>,6<em>R</em>)-, 4-Thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, 6-[[(2<em>R</em>)-aminophenylacetyl]amino]-3,3-dimethyl-7-oxo-, (2<em>S</em>,5<em>R</em>,6<em>R</em>)-, 6-[<span class="text-smallcaps">D</span>-(-)-2-Amino-2-phenylacetamido]penicillanic acid, 6-[<span class="text-smallcaps">D</span>-(-)-α-Aminophenylacetamido]penicillanic acid, <span class="text-smallcaps">D</span>-(-)-6-(α-Aminophenylacetamido)penicillanic acid, <span class="text-smallcaps">D</span>-(-)-α-Aminobenzylpenicillin, <span class="text-smallcaps">D</span>-(-)-α-Aminopenicillin, <span class="text-smallcaps">D</span>-Ampicillin, A-Pen, AY 6108, Adobacillin, Albipen, Alpen, Amblosin, Amcillin, Amfipen, Amipenix, Amipenix S, Amotital, Ampi-Bol, Ampi-kel, Ampicillin A, Ampicillin anhydrate, Ampimed, Ampipenin, Ampisyn, Ampitab, Ampivet, Amplisom, Amplital, Austrapen, BRL 1341, Bacipen, Binotal, Bonapicillin, Britacil, Britapen, Campicillin, Cincillin, Copharcilin, Doktacillin, Domicillin, Dumopen, Ficillin, Gobemicina, Grampenil, Guicitrina, Hiperbiotico, Marisilan, MeSH ID: D000667, NSC 528986, Nuvapen, Olin Kid, Omnipe, Omnipen, P 50, Penbristol, Penbritin, Penbritin paediatric, Penbritin syrup, Penbrock, Penicillin, (aminophenylmethyl)-, Penicline, Pentrexyl, Polyflex, Polyflex (antibiotic), Ponecil, QIDamp, Redicilin, Reichlin, Roscillin, Semicillin, Synpenin, Tokiocillin, Tolomol, Totacillin, Totalciclina, Totapen, Ultrabion, Ultrabron, Unacim, Viccillin, Viccillin S, Wy 5103; object_uuid=fo-f3320167c186dfbe |
| 263,864 | consensus_match | cas_match_labels | — | {"69-53-4":"exactMatch"} | group_key=ampicillin||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'69-53-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f3320167c186dfbe: {'69-53-4': 'exactMatch'} |
| 282,897 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O4… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O4… | rdkit_post_consensus from 'CC1(C(N2C(S1)C(C2=O)NC(=O)C(C3=CC=CC=C3)N)C(=O)O)C'; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 289,382 | strip_catalogue_altlabels | altLabel | [{"@value":"(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-… | [{"@value":"(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-… | Removed 5 catalogue altLabel value(s): 'AY 6108' (grade code), 'BRL 1341' (grade code), 'NSC 528986' (registry code), 'P 50' (grade code), 'Wy 5103' (grade code) |
| 368,862 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/d48c9158-cd59-… | associations resolved on the elementary layer |
| 390,651 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O4… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O4… | typed the way the ontology types it |
| 398,353 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 398,354 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O4… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H19N3O4… | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/10216 | prefLabel | ef:agent/bootstrap_labels | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v0 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v1 |
| ef:activity/change/20260821T1554374006150000/10217 | name | ef:agent/bootstrap_labels | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v1 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v2 |
| ef:activity/change/20260821T1554374006150000/10218 | synonyms | ef:agent/bootstrap_labels | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v2 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v3 |
| ef:activity/change/20260821T1554374006150000/175676 | context | ef:agent/default_context_mapping | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v3 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v4 |
| ef:activity/change/20260821T1554374006150000/175677 | context_iri | ef:agent/default_context_mapping | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v4 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v5 |
| ef:activity/change/20260821T1554374006150000/216731 | unit_iri | ef:agent/unit_normalization | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v5 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v6 |
| ef:activity/change/20260821T1554374006150000/223481 | prefLabel | ef:agent/normalize_name_case | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v6 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v7 |
| ef:activity/change/20260821T1554374006150000/236930 | properties | ef:agent/enrich_references | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v7 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v8 |
| ef:activity/change/20260821T1554374006150000/236931 | skos_definition | ef:agent/enrich_references | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v8 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v9 |
| ef:activity/change/20260821T1554374006150000/236932 | references | ef:agent/enrich_references | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v9 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v10 |
| ef:activity/change/20260821T1554374006150000/251121 | properties | ef:agent/rdkit_pre_consensus | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v10 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v11 |
| ef:activity/change/20260821T1554374006150000/255832 | altLabel | ef:agent/chebi_altlabels | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v11 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v12 |
| ef:activity/change/20260821T1554374006150000/263863 | altLabel | ef:agent/consensus_match | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v12 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v13 |
| ef:activity/change/20260821T1554374006150000/263864 | cas_match_labels | ef:agent/consensus_match | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v13 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v14 |
| ef:activity/change/20260821T1554374006150000/282897 | properties | ef:agent/rdkit_post_consensus | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v14 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v15 |
| ef:activity/change/20260821T1554374006150000/289382 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v15 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v16 |
| ef:activity/change/20260821T1554374006150000/368862 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v16 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v17 |
| ef:activity/change/20260821T1554374006150000/390651 | properties | ef:agent/normalise_property_values | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v17 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v18 |
| ef:activity/change/20260821T1554374006150000/398353 | types | ef:agent/link_flows_to_their_substance | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v18 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v19 |
| ef:activity/change/20260821T1554374006150000/398354 | properties | ef:agent/link_flows_to_their_substance | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v19 | ef:flow/d48c9158-cd59-4c80-b6b2-f617e2a26523/v20 |