Methylene blue
Everything that changed this flow. Back to the flow
d4e7dd77-94c2-4c87-9543-0aaf23c5508e
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| altLabel | 4 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 5 catalogue altLabel value(s): 'BIVN 401' (grade code), 'C.I. 52015' (registry code), 'NSC 617593' (registry code), 'Schultz 1038' (trade name), 'TRx 0237' (grade code) |
| properties | 4 | enrich_references, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | cas=61-73-4; cc_chebi_agreed_name='Methylene blue'; object_uuid=fo-cbee14ffad1e3b19 |
| cas_match_labels | 1 | consensus_match | group_key=methylthioniniumchloride||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'61-73-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-cbee14ffad1e3b19: {'61-73-4': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['61-73-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_6872']; candidate_pubchem_cids=[4139, 6099, 104827, 292948, 16211647, 24783227, 51001876, 53461413, 131674190]; selected_pubchem_cids=[6099]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 14,487 | bootstrap_labels | prefLabel | — | [{"@value":"methylthioninium chloride","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAtt… | Bootstrapped prefLabel from legacy name field |
| 14,488 | bootstrap_labels | name | methylthioninium chloride | — | Purged legacy name field to enforce prefLabel usage |
| 14,489 | bootstrap_labels | synonyms | ["3,7-Bis(dimethylamino)-5-phenothiazinium Chloride","3,7-Bis(dimethylamino)phenazathionium chloride","3,7-Bis(dimethyl… | [] | Removed legacy synonyms field in favor of structured labels |
| 175,914 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 175,915 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 218,121 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 224,444 | normalize_name_case | prefLabel | [{"@value":"methylthioninium chloride","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAtt… | [{"@value":"Methylthioninium Chloride","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAtt… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 240,897 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H18ClN3… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 240,898 | enrich_references | skos_definition | — | [{"@value":"An organic chloride salt having 3,7-bis(dimethylamino)phenothiazin-5-ium as the counterion. A commonly used… | Merged ChEBI/PubChem definitions into skos:definition |
| 240,899 | enrich_references | references | [] | [{"@id":"https://chem.echa.europa.eu/100.000.469","provenance":{"prov:wasGeneratedBy":"enrich_references.pubchem_identi… | Added references with provenance; cas_numbers=['61-73-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_6872']; candidate_pubchem_cids=[4139, 6099, 104827, 292948, 16211647, 24783227, 51001876, 53461413, 131674190]; selected_pubchem_cids=[6099]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 252,268 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H18ClN3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H18ClN3… | rdkit_pre_consensus from 'CN(C)C1=CC2=C(C=C1)N=C3C=CC(=[N+](C)C)C=C3S2.[Cl-]'; added: monoisotopic_mass |
| 256,321 | chebi_altlabels | altLabel | [] | [{"@value":"3,7-bis(dimethylamino)phenothiazin-5-ium chloride","@language":"en","source":{"prov:wasGeneratedBy":"chebi_… | Added 13 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 268,984 | consensus_match | prefLabel | [{"@value":"Methylthioninium Chloride","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAtt… | [{"@value":"Methylene blue","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"… | cas=61-73-4; cc_chebi_agreed_name='Methylene blue'; object_uuid=fo-cbee14ffad1e3b19 |
| 268,985 | consensus_match | altLabel | [{"@value":"3,7-bis(dimethylamino)phenothiazin-5-ium chloride","@language":"en","source":{"prov:wasGeneratedBy":"chebi_… | [{"@value":"3,7-bis(dimethylamino)phenothiazin-5-ium chloride","@language":"en","source":{"prov:wasGeneratedBy":"chebi_… | cas=61-73-4; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-cbee14ffad1e3b19 |
| 268,986 | consensus_match | altLabel | [{"@value":"3,7-bis(dimethylamino)phenothiazin-5-ium chloride","@language":"en","source":{"prov:wasGeneratedBy":"chebi_… | [{"@value":"3,7-bis(dimethylamino)phenothiazin-5-ium chloride","@language":"en","source":{"prov:wasGeneratedBy":"chebi_… | group_key=methylthioniniumchloride||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); cas=61-73-4; added Common Chemistry CAS names as altLabel: 3,7-Bis(dimethylamino)-5λ4-phenothiazin-5-ylium chloride, Aizen Methylene Blue BH, Aizen Methylene Blue FZ, BIVN 401, Basic Blue 2B, Basic Lake Blue, C.I. Basic Blue 9, C.I. Solvent Blue 8, Calcozine Blue ZF, Chromosmon, Duasyn Basic Blue IAD, Ext D and C Blue No. 1, External Blue 1, Hidaco Methylene Blue Salt Free, Izit Crystal Dye, Leather Pure Blue HB, Loffler's alkaline Methylene Blue, Maxilon Blue SG, MeSH ID: D008751, Methylene Blue 2B, Methylene Blue 2BF, Methylene Blue 2BN, Methylene Blue 2BP, Methylene Blue A, Methylene Blue B, Methylene Blue BB, Methylene Blue BBA, Methylene Blue BD, Methylene Blue BP, Methylene Blue BPC, Methylene Blue BX, Methylene Blue BZ, Methylene Blue D, Methylene Blue FZ, Methylene Blue G, Methylene Blue GZ, Methylene Blue HGG, Methylene Blue Iad, Methylene Blue JFA, Methylene Blue MB, Methylene Blue N, Methylene Blue NF, Methylene Blue NZ, Methylene Blue SG, Methylene Blue SP, Methylene Blue ZF, Methylene Blue ZX, Methylene Blue Zinc Free, Methylene Blue chloride, Methylene Blue solution alkaline according to Loeffler, Methylene blue polychrome, Methylenium ceruleum, Methylthionine chloride, Methylthioninium chloride Proveblue, Mitsui Methylene Blue, NSC 617593, Phenothiazin-5-ium, 3,7-bis(dimethylamino)-, chloride, Phenothiazin-5-ium, 3,7-bis(dimethylamino)-, chloride (1:1), Proveblue, Rember TM, ST 093058, ST093058, Sandocryl Blue BRL, Schultz 1038, Sigma A 4043, Suvus, TRx 0237, Tetramethylthionine, Tetramethylthionine chloride, Urolene Blue, Virostat, Yamamoto Methylene Blue B, Yamamoto Methylene Blue ZF; object_uuid=fo-cbee14ffad1e3b19 |
| 268,987 | consensus_match | cas_match_labels | — | {"61-73-4":"exactMatch"} | group_key=methylthioniniumchloride||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'61-73-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-cbee14ffad1e3b19: {'61-73-4': 'exactMatch'} |
| 284,148 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H18ClN3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H18ClN3… | rdkit_post_consensus from 'CN(C)C1=CC2=C(C=C1)N=C3C=CC(=[N+](C)C)C=C3S2.[Cl-]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,224 | strip_catalogue_altlabels | altLabel | [{"@value":"3,7-bis(dimethylamino)phenothiazin-5-ium chloride","@language":"en","source":{"prov:wasGeneratedBy":"chebi_… | [{"@value":"3,7-bis(dimethylamino)phenothiazin-5-ium chloride","@language":"en","source":{"prov:wasGeneratedBy":"chebi_… | Removed 5 catalogue altLabel value(s): 'BIVN 401' (grade code), 'C.I. 52015' (registry code), 'NSC 617593' (registry code), 'Schultz 1038' (trade name), 'TRx 0237' (grade code) |
| 368,981 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/d4e7dd77-94c2-… | associations resolved on the elementary layer |
| 391,815 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H18ClN3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H18ClN3… | typed the way the ontology types it |
| 400,013 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/ChemicalSalt"] | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/14487 | prefLabel | ef:agent/bootstrap_labels | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v0 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v1 |
| ef:activity/change/20260822T0600486828500000/14488 | name | ef:agent/bootstrap_labels | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v1 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v2 |
| ef:activity/change/20260822T0600486828500000/14489 | synonyms | ef:agent/bootstrap_labels | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v2 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v3 |
| ef:activity/change/20260822T0600486828500000/175914 | context | ef:agent/default_context_mapping | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v3 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v4 |
| ef:activity/change/20260822T0600486828500000/175915 | context_iri | ef:agent/default_context_mapping | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v4 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v5 |
| ef:activity/change/20260822T0600486828500000/218121 | unit_iri | ef:agent/unit_normalization | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v5 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v6 |
| ef:activity/change/20260822T0600486828500000/224444 | prefLabel | ef:agent/normalize_name_case | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v6 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v7 |
| ef:activity/change/20260822T0600486828500000/240897 | properties | ef:agent/enrich_references | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v7 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v8 |
| ef:activity/change/20260822T0600486828500000/240898 | skos_definition | ef:agent/enrich_references | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v8 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v9 |
| ef:activity/change/20260822T0600486828500000/240899 | references | ef:agent/enrich_references | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v9 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v10 |
| ef:activity/change/20260822T0600486828500000/252268 | properties | ef:agent/rdkit_pre_consensus | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v10 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v11 |
| ef:activity/change/20260822T0600486828500000/256321 | altLabel | ef:agent/chebi_altlabels | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v11 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v12 |
| ef:activity/change/20260822T0600486828500000/268984 | prefLabel | ef:agent/consensus_match | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v12 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v13 |
| ef:activity/change/20260822T0600486828500000/268985 | altLabel | ef:agent/consensus_match | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v13 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v14 |
| ef:activity/change/20260822T0600486828500000/268986 | altLabel | ef:agent/consensus_match | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v14 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v15 |
| ef:activity/change/20260822T0600486828500000/268987 | cas_match_labels | ef:agent/consensus_match | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v15 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v16 |
| ef:activity/change/20260822T0600486828500000/284148 | properties | ef:agent/rdkit_post_consensus | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v16 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v17 |
| ef:activity/change/20260822T0600486828500000/290224 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v17 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v18 |
| ef:activity/change/20260822T0600486828500000/368981 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v18 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v19 |
| ef:activity/change/20260822T0600486828500000/391815 | properties | ef:agent/normalise_property_values | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v19 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v20 |
| ef:activity/change/20260822T0600486828500000/400013 | types | ef:agent/link_flows_to_their_substance | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v20 | ef:flow/d4e7dd77-94c2-4c87-9543-0aaf23c5508e/v21 |