Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'NSC 406264' (registry code)
cas_match_labels 1 consensus_match group_key=7-methyl-3-methyleneocta-1,6-diene||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'123-35-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-86263782143eb5d4: {'123-35-3': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
prefLabel 1 bootstrap_labels Bootstrapped prefLabel from legacy name field
references 1 enrich_references Added references with provenance; cas_numbers=['123-35-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17221']; candidate_pubchem_cids=[31253]; selected_pubchem_cids=[31253]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

19
# Step Field From To Why
90 bootstrap_labels prefLabel [{"@value":"7-methyl-3-methyleneocta-1,6-diene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","pr… Bootstrapped prefLabel from legacy name field
91 bootstrap_labels name 7-methyl-3-methyleneocta-1,6-diene Purged legacy name field to enforce prefLabel usage
92 bootstrap_labels synonyms ["organic","7-methyl-3-methyleneocta-1,6-diene","m-iff","myrcene","myrceneextra","myrcenesupra"] [] Removed legacy synonyms field in favor of structured labels
175,948 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
175,949 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
213,368 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
227,253 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
227,254 enrich_references skos_definition [{"@value":"A monoterpene that is octa-1,6-diene bearing methylene and methyl substituents at positions 3 and 7 respect… Merged ChEBI/PubChem definitions into skos:definition
227,255 enrich_references references [] [{"@id":"gmelin:279258","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"con… Added references with provenance; cas_numbers=['123-35-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17221']; candidate_pubchem_cids=[31253]; selected_pubchem_cids=[31253]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
248,334 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… rdkit_pre_consensus from 'C=CC(=C)CCC=C(C)C'; added: monoisotopic_mass
254,401 chebi_altlabels altLabel [] [{"@value":"7-methyl-3-methylene-1,6-octadiene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
263,341 consensus_match altLabel [{"@value":"7-methyl-3-methylene-1,6-octadiene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… [{"@value":"7-methyl-3-methylene-1,6-octadiene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… group_key=7-methyl-3-methyleneocta-1,6-diene||dimension=Environmental > media=Air > strata=Unknown; cas=123-35-3; added Common Chemistry CAS names as altLabel: 1,6-Octadiene, 7-methyl-3-methylene-, 2-Methyl-6-methylene-2,7-octadiene, 3-Methylene-7-methyl-1,6-octadiene, NSC 406264, β-Geraniolene, β-Myrcene; object_uuid=fo-86263782143eb5d4
263,342 consensus_match cas_match_labels {"123-35-3":"exactMatch"} group_key=7-methyl-3-methyleneocta-1,6-diene||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'123-35-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-86263782143eb5d4: {'123-35-3': 'exactMatch'}
273,477 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '7-methyl-3-methyleneocta-1,6-diene'
279,828 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… rdkit_post_consensus from 'C=CC(=C)CCC=C(C)C'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
287,287 strip_catalogue_altlabels altLabel [{"@value":"7-methyl-3-methylene-1,6-octadiene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… [{"@value":"7-methyl-3-methylene-1,6-octadiene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… Removed 1 catalogue altLabel value(s): 'NSC 406264' (registry code)
369,018 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/d4f4d264-0cb2-… associations resolved on the elementary layer
387,758 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… typed the way the ontology types it
394,221 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

19 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T1416470405690000/90 prefLabel ef:agent/bootstrap_labels ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v0 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v1
ef:activity/change/20260820T1416470405690000/91 name ef:agent/bootstrap_labels ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v1 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v2
ef:activity/change/20260820T1416470405690000/92 synonyms ef:agent/bootstrap_labels ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v2 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v3
ef:activity/change/20260820T1416470405690000/175948 context ef:agent/default_context_mapping ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v3 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v4
ef:activity/change/20260820T1416470405690000/175949 context_iri ef:agent/default_context_mapping ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v4 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v5
ef:activity/change/20260820T1416470405690000/213368 unit_iri ef:agent/unit_normalization ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v5 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v6
ef:activity/change/20260820T1416470405690000/227253 properties ef:agent/enrich_references ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v6 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v7
ef:activity/change/20260820T1416470405690000/227254 skos_definition ef:agent/enrich_references ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v7 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v8
ef:activity/change/20260820T1416470405690000/227255 references ef:agent/enrich_references ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v8 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v9
ef:activity/change/20260820T1416470405690000/248334 properties ef:agent/rdkit_pre_consensus ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v9 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v10
ef:activity/change/20260820T1416470405690000/254401 altLabel ef:agent/chebi_altlabels ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v10 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v11
ef:activity/change/20260820T1416470405690000/263341 altLabel ef:agent/consensus_match ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v11 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v12
ef:activity/change/20260820T1416470405690000/263342 cas_match_labels ef:agent/consensus_match ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v12 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v13
ef:activity/change/20260820T1416470405690000/273477 properties ef:agent/opsin_iupac ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v13 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v14
ef:activity/change/20260820T1416470405690000/279828 properties ef:agent/rdkit_post_consensus ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v14 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v15
ef:activity/change/20260820T1416470405690000/287287 altLabel ef:agent/strip_catalogue_altlabels ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v15 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v16
ef:activity/change/20260820T1416470405690000/369018 concept_associations ef:agent/carry_associations_onto_flows ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v16 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v17
ef:activity/change/20260820T1416470405690000/387758 properties ef:agent/normalise_property_values ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v17 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v18
ef:activity/change/20260820T1416470405690000/394221 types ef:agent/link_flows_to_their_substance ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v18 ef:flow/d4f4d264-0cb2-4480-bf72-150a562705cd/v19

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