Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 2 catalogue altLabel value(s): 'Chipman 3142' (trade name), 'NSC 10235' (registry code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=tecnazene||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'117-18-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-57b12d9eee1673db: {'117-18-0': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['117-18-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_82044']; candidate_pubchem_cids=[8330, 362811]; selected_pubchem_cids=[8330]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

21
# Step Field From To Why
1,483 bootstrap_labels prefLabel [{"@value":"tecnazene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… Bootstrapped prefLabel from legacy name field
1,484 bootstrap_labels name tecnazene Purged legacy name field to enforce prefLabel usage
1,485 bootstrap_labels synonyms ["1,2,4,5-Tetrachloro-3-nitrobenzene","2,3,5,6-TCNB","2,3,5,6-Tetrachlor-1-nitrobenzol","2,3,5,6-Tetrachlor-3-nitrobenz… [] Removed legacy synonyms field in favor of structured labels
176,554 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
176,555 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
213,836 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
221,437 normalize_name_case prefLabel [{"@value":"tecnazene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… [{"@value":"Tecnazene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
228,610 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl4NO2"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
228,611 enrich_references skos_definition [{"@value":"A C-nitro compound that is nitrobenzene in which the four hydrogens located ortho- and para- to the nitro g… Merged ChEBI/PubChem definitions into skos:definition
228,612 enrich_references references [] [{"@id":"agr:IND20401074","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"c… Added references with provenance; cas_numbers=['117-18-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_82044']; candidate_pubchem_cids=[8330, 362811]; selected_pubchem_cids=[8330]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
248,733 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl4NO2"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl4NO2"… rdkit_pre_consensus from 'C1=C(C(=C(C(=C1Cl)Cl)[N+](=O)[O-])Cl)Cl'; added: monoisotopic_mass
254,559 chebi_altlabels altLabel [] [{"@value":"1,2,4,5-tetrachloro-3-nitrobenzene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… Added 20 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
272,277 consensus_match altLabel [{"@value":"1,2,4,5-tetrachloro-3-nitrobenzene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… [{"@value":"1,2,4,5-tetrachloro-3-nitrobenzene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… group_key=tecnazene||dimension=Environmental > media=Water > water_body=Unknown; cas=117-18-0; added Common Chemistry CAS names as altLabel: 1-Nitro-2,3,5,6-tetrachlorobenzene, Benzene, 1,2,4,5-tetrachloro-3-nitro-, Chipman 3142, Folosan DB 905, NSC 10235, Napotate, TCNB (pesticide); object_uuid=fo-57b12d9eee1673db
272,278 consensus_match cas_match_labels {"117-18-0":"exactMatch"} group_key=tecnazene||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'117-18-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-57b12d9eee1673db: {'117-18-0': 'exactMatch'}
273,868 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl4NO2"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl4NO2"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '1,2,4,5-tetrachloro-3-nitrobenzene'
280,258 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl4NO2"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl4NO2"… rdkit_post_consensus from 'O=[N+]([O-])c1c(Cl)c(Cl)cc(Cl)c1Cl'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
287,570 strip_catalogue_altlabels altLabel [{"@value":"1,2,4,5-tetrachloro-3-nitrobenzene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… [{"@value":"1,2,4,5-tetrachloro-3-nitrobenzene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… Removed 2 catalogue altLabel value(s): 'Chipman 3142' (trade name), 'NSC 10235' (registry code)
369,320 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/d611f77b-a102-… associations resolved on the elementary layer
388,158 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl4NO2"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6HCl4NO2"… typed the way the ontology types it
394,771 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
394,772 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_33286","rdfs:label":"agrochemical","http://www.w3.org/2004/02/skos/core#d… the substance's answer, copied onto its flow

PROV-O trail

21 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T1416470405690000/1483 prefLabel ef:agent/bootstrap_labels ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v0 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v1
ef:activity/change/20260820T1416470405690000/1484 name ef:agent/bootstrap_labels ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v1 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v2
ef:activity/change/20260820T1416470405690000/1485 synonyms ef:agent/bootstrap_labels ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v2 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v3
ef:activity/change/20260820T1416470405690000/176554 context ef:agent/default_context_mapping ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v3 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v4
ef:activity/change/20260820T1416470405690000/176555 context_iri ef:agent/default_context_mapping ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v4 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v5
ef:activity/change/20260820T1416470405690000/213836 unit_iri ef:agent/unit_normalization ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v5 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v6
ef:activity/change/20260820T1416470405690000/221437 prefLabel ef:agent/normalize_name_case ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v6 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v7
ef:activity/change/20260820T1416470405690000/228610 properties ef:agent/enrich_references ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v7 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v8
ef:activity/change/20260820T1416470405690000/228611 skos_definition ef:agent/enrich_references ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v8 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v9
ef:activity/change/20260820T1416470405690000/228612 references ef:agent/enrich_references ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v9 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v10
ef:activity/change/20260820T1416470405690000/248733 properties ef:agent/rdkit_pre_consensus ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v10 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v11
ef:activity/change/20260820T1416470405690000/254559 altLabel ef:agent/chebi_altlabels ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v11 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v12
ef:activity/change/20260820T1416470405690000/272277 altLabel ef:agent/consensus_match ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v12 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v13
ef:activity/change/20260820T1416470405690000/272278 cas_match_labels ef:agent/consensus_match ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v13 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v14
ef:activity/change/20260820T1416470405690000/273868 properties ef:agent/opsin_iupac ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v14 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v15
ef:activity/change/20260820T1416470405690000/280258 properties ef:agent/rdkit_post_consensus ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v15 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v16
ef:activity/change/20260820T1416470405690000/287570 altLabel ef:agent/strip_catalogue_altlabels ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v16 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v17
ef:activity/change/20260820T1416470405690000/369320 concept_associations ef:agent/carry_associations_onto_flows ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v17 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v18
ef:activity/change/20260820T1416470405690000/388158 properties ef:agent/normalise_property_values ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v18 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v19
ef:activity/change/20260820T1416470405690000/394771 types ef:agent/link_flows_to_their_substance ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v19 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v20
ef:activity/change/20260820T1416470405690000/394772 roles ef:agent/link_flows_to_their_substance ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v20 ef:flow/d611f77b-a102-4555-8ff2-6735b60c65b4/v21

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