Cobalt(2+)
Everything that changed this flow. Back to the flow
d6e44edb-2604-4112-b782-483f61c9c3e7
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 4 | chebi_altlabels, consensus_match, dedupe_altlabels, substance_label_v1 | demoted by the substance's name: Cobalt (ii) |
| prefLabel | 3 | bootstrap_labels, normalize_name_case, substance_label_v1 | the substance's name: Cobalt(2+) |
| cas_match_labels | 1 | consensus_match | group_key=cobalt(ii)||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'pubchem']; cas_sources={'22541-53-3': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f4b61de95e8a0514: {'22541-53-3': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['22541-53-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_48828']; candidate_pubchem_cids=[104729, 184142]; selected_pubchem_cids=[104729]; formula_similarity_expected=['Co']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
23| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 11,445 | bootstrap_labels | prefLabel | — | [{"@value":"cobalt (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Bootstrapped prefLabel from legacy name field |
| 11,446 | bootstrap_labels | name | cobalt (ii) | — | Purged legacy name field to enforce prefLabel usage |
| 11,447 | bootstrap_labels | synonyms | ["element in usetox"] | [] | Removed legacy synonyms field in favor of structured labels |
| 177,050 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 177,051 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 217,139 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,770 | normalize_name_case | prefLabel | [{"@value":"cobalt (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Cobalt (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 238,073 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Co","Co+2"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 238,074 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 238,075 | enrich_references | references | [] | [{"@id":"gmelin:6853","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['22541-53-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_48828']; candidate_pubchem_cids=[104729, 184142]; selected_pubchem_cids=[104729]; formula_similarity_expected=['Co']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,452 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Co","Co+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Co","Co+2"… | rdkit_pre_consensus from '[Co+2]'; added: monoisotopic_mass |
| 255,978 | chebi_altlabels | altLabel | [] | [{"@value":"COBALT (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 265,257 | consensus_match | altLabel | [{"@value":"COBALT (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"COBALT (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | group_key=cobalt(ii)||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=22541-53-3; added Common Chemistry CAS names as altLabel: Cobalt cation (Co<sup>2+</sup>), Cobalt dication, Cobalt ion(2+), Cobalt(II) ion, Cobalt, ion (Co<sup>2+</sup>); object_uuid=fo-f4b61de95e8a0514 |
| 265,258 | consensus_match | cas_match_labels | — | {"22541-53-3":"exactMatch"} | group_key=cobalt(ii)||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'pubchem']; cas_sources={'22541-53-3': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f4b61de95e8a0514: {'22541-53-3': 'exactMatch'} |
| 276,644 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Co","Co+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Co","Co+2"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Cobalt (ii)' |
| 283,268 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Co","Co+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Co","Co+2"… | rdkit_post_consensus from '[Co+2]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,598 | dedupe_altlabels | altLabel | [{"@value":"COBALT (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"COBALT (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | Deduplicated altLabel values and removed entries matching prefLabel |
| 369,568 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/d6e44edb-2604-… | associations resolved on the elementary layer |
| 391,002 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Co","Co+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Co","Co+2"… | typed the way the ontology types it |
| 398,851 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/AtomCation"] | the substance's answer, copied onto its flow |
| 398,852 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Co","Co+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Co","Co+2"… | the substance's answer, copied onto its flow |
| 403,922 | substance_label_v1 | altLabel | [{"@value":"COBALT (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"COBALT (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | demoted by the substance's name: Cobalt (ii) |
| 403,923 | substance_label_v1 | prefLabel | [{"@value":"Cobalt (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Cobalt(2+)","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"substance_label_v1","prov:wasAtt… | the substance's name: Cobalt(2+) |
PROV-O trail
23 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/11445 | prefLabel | ef:agent/bootstrap_labels | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v0 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v1 |
| ef:activity/change/20260820T0738569779880000/11446 | name | ef:agent/bootstrap_labels | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v1 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v2 |
| ef:activity/change/20260820T0738569779880000/11447 | synonyms | ef:agent/bootstrap_labels | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v2 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v3 |
| ef:activity/change/20260820T0738569779880000/177050 | context | ef:agent/default_context_mapping | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v3 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v4 |
| ef:activity/change/20260820T0738569779880000/177051 | context_iri | ef:agent/default_context_mapping | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v4 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v5 |
| ef:activity/change/20260820T0738569779880000/217139 | unit_iri | ef:agent/unit_normalization | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v5 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v6 |
| ef:activity/change/20260820T0738569779880000/223770 | prefLabel | ef:agent/normalize_name_case | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v6 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v7 |
| ef:activity/change/20260820T0738569779880000/238073 | properties | ef:agent/enrich_references | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v7 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v8 |
| ef:activity/change/20260820T0738569779880000/238074 | skos_definition | ef:agent/enrich_references | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v8 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v9 |
| ef:activity/change/20260820T0738569779880000/238075 | references | ef:agent/enrich_references | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v9 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v10 |
| ef:activity/change/20260820T0738569779880000/251452 | properties | ef:agent/rdkit_pre_consensus | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v10 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v11 |
| ef:activity/change/20260820T0738569779880000/255978 | altLabel | ef:agent/chebi_altlabels | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v11 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v12 |
| ef:activity/change/20260820T0738569779880000/265257 | altLabel | ef:agent/consensus_match | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v12 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v13 |
| ef:activity/change/20260820T0738569779880000/265258 | cas_match_labels | ef:agent/consensus_match | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v13 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v14 |
| ef:activity/change/20260820T0738569779880000/276644 | properties | ef:agent/opsin_iupac | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v14 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v15 |
| ef:activity/change/20260820T0738569779880000/283268 | properties | ef:agent/rdkit_post_consensus | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v15 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v16 |
| ef:activity/change/20260820T0738569779880000/292598 | altLabel | ef:agent/dedupe_altlabels | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v16 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v17 |
| ef:activity/change/20260820T0738569779880000/369568 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v17 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v18 |
| ef:activity/change/20260820T0738569779880000/391002 | properties | ef:agent/normalise_property_values | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v18 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v19 |
| ef:activity/change/20260820T0738569779880000/398851 | types | ef:agent/link_flows_to_their_substance | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v19 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v20 |
| ef:activity/change/20260820T0738569779880000/398852 | properties | ef:agent/link_flows_to_their_substance | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v20 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v21 |
| ef:activity/change/20260820T0738569779880000/403922 | altLabel | ef:agent/substance_label_v1 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v21 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v22 |
| ef:activity/change/20260820T0738569779880000/403923 | prefLabel | ef:agent/substance_label_v1 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v22 | ef:flow/d6e44edb-2604-4112-b782-483f61c9c3e7/v23 |