Skatole
Everything that changed this flow. Back to the flow
d909475f-a6d4-42ce-a693-74bd8f267eb7
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 4 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 122024' (registry code) |
| prefLabel | 2 | bootstrap_labels, consensus_match | cas=83-34-1; cc_chebi_agreed_name='Skatole'; object_uuid=fo-4ed6643af52f89fd |
| cas_match_labels | 1 | consensus_match | group_key=3-methylindole||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'83-34-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-4ed6643af52f89fd: {'83-34-1': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['83-34-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_9171']; candidate_pubchem_cids=[6736, 70130, 23063043]; selected_pubchem_cids=[6736]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 14,195 | bootstrap_labels | prefLabel | — | [{"@value":"3-methylindole","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | Bootstrapped prefLabel from legacy name field |
| 14,196 | bootstrap_labels | name | 3-methylindole | — | Purged legacy name field to enforce prefLabel usage |
| 14,197 | bootstrap_labels | synonyms | [".beta.-Methylindole","1H-Indole, 3-methyl-","3 Methylindole","3-MI","3-Methyl-1H-indole","3-Methyl-4,5-benzopyrrole",… | [] | Removed legacy synonyms field in favor of structured labels |
| 179,164 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 179,165 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 218,027 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 240,620 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H9N"],"a… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 240,621 | enrich_references | skos_definition | — | [{"@value":"A methylindole carrying a methyl substituent at position 3. It is produced during the anoxic metabolism of… | Merged ChEBI/PubChem definitions into skos:definition |
| 240,622 | enrich_references | references | [] | [{"@id":"gmelin:396961","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"con… | Added references with provenance; cas_numbers=['83-34-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_9171']; candidate_pubchem_cids=[6736, 70130, 23063043]; selected_pubchem_cids=[6736]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 252,184 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H9N"],"a… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H9N"],"a… | rdkit_pre_consensus from 'CC1=CNC2=CC=CC=C12'; added: monoisotopic_mass |
| 256,290 | chebi_altlabels | altLabel | [] | [{"@value":"3-methyl-1H-indole","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | Added 6 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 262,137 | consensus_match | prefLabel | [{"@value":"3-methylindole","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | [{"@value":"Skatole","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"consens… | cas=83-34-1; cc_chebi_agreed_name='Skatole'; object_uuid=fo-4ed6643af52f89fd |
| 262,138 | consensus_match | altLabel | [{"@value":"3-methyl-1H-indole","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"3-methyl-1H-indole","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | cas=83-34-1; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-4ed6643af52f89fd |
| 262,139 | consensus_match | altLabel | [{"@value":"3-methyl-1H-indole","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"3-methyl-1H-indole","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | group_key=3-methylindole||dimension=Environmental > media=Water > water_body=Unknown; cas=83-34-1; added Common Chemistry CAS names as altLabel: 1<em>H</em>-Indole, 3-methyl-, Indole, 3-methyl-, Indole, 3-methyl-(skatole), NSC 122024, Scatole, β-Methylindole; object_uuid=fo-4ed6643af52f89fd |
| 262,140 | consensus_match | cas_match_labels | — | {"83-34-1":"exactMatch"} | group_key=3-methylindole||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'83-34-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-4ed6643af52f89fd: {'83-34-1': 'exactMatch'} |
| 277,379 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H9N"],"a… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H9N"],"a… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Skatole' |
| 284,059 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H9N"],"a… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H9N"],"a… | rdkit_post_consensus from 'Cc1c[nH]c2ccccc12'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,163 | strip_catalogue_altlabels | altLabel | [{"@value":"3-methyl-1H-indole","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"3-methyl-1H-indole","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | Removed 1 catalogue altLabel value(s): 'NSC 122024' (registry code) |
| 370,608 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/d909475f-a6d4-… | associations resolved on the elementary layer |
| 391,734 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H9N"],"a… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H9N"],"a… | typed the way the ontology types it |
| 399,905 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/14195 | prefLabel | ef:agent/bootstrap_labels | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v0 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v1 |
| ef:activity/change/20260821T1554374006150000/14196 | name | ef:agent/bootstrap_labels | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v1 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v2 |
| ef:activity/change/20260821T1554374006150000/14197 | synonyms | ef:agent/bootstrap_labels | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v2 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v3 |
| ef:activity/change/20260821T1554374006150000/179164 | context | ef:agent/default_context_mapping | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v3 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v4 |
| ef:activity/change/20260821T1554374006150000/179165 | context_iri | ef:agent/default_context_mapping | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v4 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v5 |
| ef:activity/change/20260821T1554374006150000/218027 | unit_iri | ef:agent/unit_normalization | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v5 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v6 |
| ef:activity/change/20260821T1554374006150000/240620 | properties | ef:agent/enrich_references | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v6 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v7 |
| ef:activity/change/20260821T1554374006150000/240621 | skos_definition | ef:agent/enrich_references | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v7 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v8 |
| ef:activity/change/20260821T1554374006150000/240622 | references | ef:agent/enrich_references | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v8 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v9 |
| ef:activity/change/20260821T1554374006150000/252184 | properties | ef:agent/rdkit_pre_consensus | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v9 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v10 |
| ef:activity/change/20260821T1554374006150000/256290 | altLabel | ef:agent/chebi_altlabels | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v10 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v11 |
| ef:activity/change/20260821T1554374006150000/262137 | prefLabel | ef:agent/consensus_match | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v11 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v12 |
| ef:activity/change/20260821T1554374006150000/262138 | altLabel | ef:agent/consensus_match | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v12 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v13 |
| ef:activity/change/20260821T1554374006150000/262139 | altLabel | ef:agent/consensus_match | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v13 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v14 |
| ef:activity/change/20260821T1554374006150000/262140 | cas_match_labels | ef:agent/consensus_match | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v14 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v15 |
| ef:activity/change/20260821T1554374006150000/277379 | properties | ef:agent/opsin_iupac | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v15 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v16 |
| ef:activity/change/20260821T1554374006150000/284059 | properties | ef:agent/rdkit_post_consensus | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v16 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v17 |
| ef:activity/change/20260821T1554374006150000/290163 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v17 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v18 |
| ef:activity/change/20260821T1554374006150000/370608 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v18 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v19 |
| ef:activity/change/20260821T1554374006150000/391734 | properties | ef:agent/normalise_property_values | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v19 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v20 |
| ef:activity/change/20260821T1554374006150000/399905 | types | ef:agent/link_flows_to_their_substance | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v20 | ef:flow/d909475f-a6d4-42ce-a693-74bd8f267eb7/v21 |