Emodin
Everything that changed this flow. Back to the flow
df119f6b-8738-4dcb-ae0d-1f04e0c26d76
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 4 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'NSC 408120' (registry code), 'NSC 622947' (registry code) |
| prefLabel | 2 | bootstrap_labels, consensus_match | cas=518-82-1; cc_chebi_agreed_name='Emodin'; object_uuid=fo-d5d59af57798025c |
| cas_match_labels | 1 | consensus_match | group_key=1,3,8-trihydroxy-6-methylanthraquinone||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'518-82-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d5d59af57798025c: {'518-82-1': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['518-82-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_42223']; candidate_pubchem_cids=[3220, 3016789, 91799197]; selected_pubchem_cids=[3220]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 16,968 | bootstrap_labels | prefLabel | — | [{"@value":"1,3,8-trihydroxy-6-methylanthraquinone","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels"… | Bootstrapped prefLabel from legacy name field |
| 16,969 | bootstrap_labels | name | 1,3,8-trihydroxy-6-methylanthraquinone | — | Purged legacy name field to enforce prefLabel usage |
| 16,970 | bootstrap_labels | synonyms | ["organic","1,3,8-trihydroxy-6-methylanthraquinone"] | [] | Removed legacy synonyms field in favor of structured labels |
| 182,660 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 182,661 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 218,904 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 243,118 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H10O5"]… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 243,119 | enrich_references | skos_definition | — | [{"@value":"A trihydroxyanthraquinone that is 9,10-anthraquinone which is substituted by hydroxy groups at positions 1,… | Merged ChEBI/PubChem definitions into skos:definition |
| 243,120 | enrich_references | references | [] | [{"@id":"beilstein:1888141","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['518-82-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_42223']; candidate_pubchem_cids=[3220, 3016789, 91799197]; selected_pubchem_cids=[3220]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 252,906 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H10O5"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H10O5"]… | rdkit_pre_consensus from 'CC1=CC2=C(C(=C1)O)C(=O)C3=C(C2=O)C=C(C=C3O)O'; added: monoisotopic_mass |
| 256,621 | chebi_altlabels | altLabel | [] | [{"@value":"1,3,8-trihydroxy-6-methyl-9,10-anthracenedione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_alt… | Added 6 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 258,492 | consensus_match | prefLabel | [{"@value":"1,3,8-trihydroxy-6-methylanthraquinone","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels"… | [{"@value":"Emodin","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"consensu… | cas=518-82-1; cc_chebi_agreed_name='Emodin'; object_uuid=fo-d5d59af57798025c |
| 258,493 | consensus_match | altLabel | [{"@value":"1,3,8-trihydroxy-6-methyl-9,10-anthracenedione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_alt… | [{"@value":"1,3,8-trihydroxy-6-methyl-9,10-anthracenedione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_alt… | cas=518-82-1; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-d5d59af57798025c |
| 258,494 | consensus_match | altLabel | [{"@value":"1,3,8-trihydroxy-6-methyl-9,10-anthracenedione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_alt… | [{"@value":"1,3,8-trihydroxy-6-methyl-9,10-anthracenedione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_alt… | group_key=1,3,8-trihydroxy-6-methylanthraquinone||dimension=Environmental > media=Water > water_body=Long-term; cas=518-82-1; added Common Chemistry CAS names as altLabel: 1,3,8-Trihydroxy-6-methyl-9,10-dihydroanthracene-9,10-dione, 1,6,8-Trihydroxy-3-methylanthraquinone, 1,8-Dihydroxy-3-(methoxymethyl)-6-methylanthracene-9,10-dione, 4,5,7-Trihydroxy-2-methylanthraquinone, 9,10-Anthracenedione, 1,3,8-trihydroxy-6-methyl-, Anthraquinone, 1,3,8-trihydroxy-6-methyl-, Archin, Emodine, Emodol, Frangula emodin, Frangulic acid, MeSH ID: D004642, NSC 408120, NSC 622947, Rheum emodin; object_uuid=fo-d5d59af57798025c |
| 258,495 | consensus_match | cas_match_labels | — | {"518-82-1":"exactMatch"} | group_key=1,3,8-trihydroxy-6-methylanthraquinone||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'518-82-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d5d59af57798025c: {'518-82-1': 'exactMatch'} |
| 278,113 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H10O5"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H10O5"]… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '1,3,8-trihydroxy-6-methyl-9,10-anthracenedione' |
| 284,848 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H10O5"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H10O5"]… | rdkit_post_consensus from 'Cc1cc(O)c2c(c1)C(=O)c1cc(O)cc(O)c1C2=O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,702 | strip_catalogue_altlabels | altLabel | [{"@value":"1,3,8-trihydroxy-6-methyl-9,10-anthracenedione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_alt… | [{"@value":"1,3,8-trihydroxy-6-methyl-9,10-anthracenedione","@language":"en","source":{"prov:wasGeneratedBy":"chebi_alt… | Removed 2 catalogue altLabel value(s): 'NSC 408120' (registry code), 'NSC 622947' (registry code) |
| 372,356 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/df119f6b-8738-… | associations resolved on the elementary layer |
| 392,465 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H10O5"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H10O5"]… | typed the way the ontology types it |
| 400,953 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/16968 | prefLabel | ef:agent/bootstrap_labels | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v0 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v1 |
| ef:activity/change/20260822T0600486828500000/16969 | name | ef:agent/bootstrap_labels | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v1 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v2 |
| ef:activity/change/20260822T0600486828500000/16970 | synonyms | ef:agent/bootstrap_labels | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v2 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v3 |
| ef:activity/change/20260822T0600486828500000/182660 | context | ef:agent/default_context_mapping | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v3 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v4 |
| ef:activity/change/20260822T0600486828500000/182661 | context_iri | ef:agent/default_context_mapping | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v4 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v5 |
| ef:activity/change/20260822T0600486828500000/218904 | unit_iri | ef:agent/unit_normalization | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v5 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v6 |
| ef:activity/change/20260822T0600486828500000/243118 | properties | ef:agent/enrich_references | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v6 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v7 |
| ef:activity/change/20260822T0600486828500000/243119 | skos_definition | ef:agent/enrich_references | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v7 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v8 |
| ef:activity/change/20260822T0600486828500000/243120 | references | ef:agent/enrich_references | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v8 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v9 |
| ef:activity/change/20260822T0600486828500000/252906 | properties | ef:agent/rdkit_pre_consensus | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v9 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v10 |
| ef:activity/change/20260822T0600486828500000/256621 | altLabel | ef:agent/chebi_altlabels | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v10 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v11 |
| ef:activity/change/20260822T0600486828500000/258492 | prefLabel | ef:agent/consensus_match | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v11 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v12 |
| ef:activity/change/20260822T0600486828500000/258493 | altLabel | ef:agent/consensus_match | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v12 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v13 |
| ef:activity/change/20260822T0600486828500000/258494 | altLabel | ef:agent/consensus_match | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v13 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v14 |
| ef:activity/change/20260822T0600486828500000/258495 | cas_match_labels | ef:agent/consensus_match | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v14 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v15 |
| ef:activity/change/20260822T0600486828500000/278113 | properties | ef:agent/opsin_iupac | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v15 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v16 |
| ef:activity/change/20260822T0600486828500000/284848 | properties | ef:agent/rdkit_post_consensus | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v16 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v17 |
| ef:activity/change/20260822T0600486828500000/290702 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v17 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v18 |
| ef:activity/change/20260822T0600486828500000/372356 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v18 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v19 |
| ef:activity/change/20260822T0600486828500000/392465 | properties | ef:agent/normalise_property_values | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v19 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v20 |
| ef:activity/change/20260822T0600486828500000/400953 | types | ef:agent/link_flows_to_their_substance | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v20 | ef:flow/df119f6b-8738-4dcb-ae0d-1f04e0c26d76/v21 |