Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 6 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus, withhold_ambiguous_mass typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 6 catalogue altLabel value(s): 'BAS 125' (grade code), 'BAS 125W' (grade code), 'BX 112' (grade code), 'BX-112' (grade code), 'KIM-112' (grade code), 'KUH-833' (grade code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=prohexadione-calcium||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'pubchem']; cas_sources={'127277-53-6': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-ca367dbcaf262c12: {'127277-53-6': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['127277-53-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_137425']; candidate_pubchem_cids=[86384, 86385, 184900, 9868965, 12001831, 15457466, 73557431, 131846437, 156588709, 163199185]; selected_pubchem_cids=[12001831]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
4,101 bootstrap_labels prefLabel [{"@value":"prohexadione-calcium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribut… Bootstrapped prefLabel from legacy name field
4,102 bootstrap_labels name prohexadione-calcium Purged legacy name field to enforce prefLabel usage
4,103 bootstrap_labels synonyms ["calcium 3-oxido-5-oxo-4-propionylcyclohex-3-enecarboxylate"] [] Removed legacy synonyms field in favor of structured labels
183,996 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
183,997 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
214,716 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
222,043 normalize_name_case prefLabel [{"@value":"prohexadione-calcium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribut… [{"@value":"Prohexadione-calcium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribut… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
231,135 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H10CaO5… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
231,136 enrich_references skos_definition [{"@value":"A calcium salt containing equal numbers of prohexadione(2−) and Ca2+ ions. A plant growth regulator, it is… Merged ChEBI/PubChem definitions into skos:definition
231,137 enrich_references references [] [{"@id":"agr:IND44016834","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"c… Added references with provenance; cas_numbers=['127277-53-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_137425']; candidate_pubchem_cids=[86384, 86385, 184900, 9868965, 12001831, 15457466, 73557431, 131846437, 156588709, 163199185]; selected_pubchem_cids=[12001831]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
249,460 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H10CaO5… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H10CaO5… rdkit_pre_consensus from 'CCC(=C1C(=O)CC(CC1=O)C(=O)[O-])[O-].[Ca+2]'; added: monoisotopic_mass
254,913 chebi_altlabels altLabel [] [{"@value":"BX-112","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
271,002 consensus_match altLabel [{"@value":"BX-112","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… [{"@value":"BX-112","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… group_key=prohexadione-calcium||dimension=Environmental > media=Water > water_body=Surface water; cas=127277-53-6; added Common Chemistry CAS names as altLabel: A 1699DF, Apogee, BAS 125, BAS 125W, BX 112, Ca-prohexadione, Calcium 3-hydroxy-5-oxo-4-propionylcyclohex-3-enecarboxylate, Cyclohexanecarboxylic acid, 3,5-dioxo-4-(1-oxopropyl)-, ion(1-), calcium, calcium salt, Cyclohexanecarboxylic acid, 3,5-dioxo-4-(1-oxopropyl)-, ion(1-), calcium, calcium salt (2:1:1); object_uuid=fo-ca367dbcaf262c12
271,003 consensus_match cas_match_labels {"127277-53-6":"exactMatch"} group_key=prohexadione-calcium||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'pubchem']; cas_sources={'127277-53-6': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-ca367dbcaf262c12: {'127277-53-6': 'exactMatch'}
274,609 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H10CaO5… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H10CaO5… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'calcium 3-oxido-5-oxo-4-propanoylcyclohex-3-ene-1-carboxylate'
281,056 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H10CaO5… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H10CaO5… rdkit_post_consensus from 'CCC(=O)C1=C([O-])CC(C(=O)[O-])CC1=O.[Ca+2]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
286,816 withhold_ambiguous_mass properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H10CaO5… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H10CaO5… withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it
288,113 strip_catalogue_altlabels altLabel [{"@value":"BX-112","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… [{"@value":"Medax Top","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… Removed 6 catalogue altLabel value(s): 'BAS 125' (grade code), 'BAS 125W' (grade code), 'BX 112' (grade code), 'BX-112' (grade code), 'KIM-112' (grade code), 'KUH-833' (grade code)
373,045 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/e1648438-1ecb-… associations resolved on the elementary layer
388,915 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H10CaO5… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H10CaO5… typed the way the ontology types it
395,840 link_flows_to_their_substance types ["https://w3id.org/chemrof/ChemicalSalt"] the substance's answer, copied onto its flow
395,841 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_33286","rdfs:label":"agrochemical","http://www.w3.org/2004/02/skos/core#d… the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T1416470405690000/4101 prefLabel ef:agent/bootstrap_labels ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v0 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v1
ef:activity/change/20260820T1416470405690000/4102 name ef:agent/bootstrap_labels ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v1 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v2
ef:activity/change/20260820T1416470405690000/4103 synonyms ef:agent/bootstrap_labels ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v2 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v3
ef:activity/change/20260820T1416470405690000/183996 context ef:agent/default_context_mapping ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v3 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v4
ef:activity/change/20260820T1416470405690000/183997 context_iri ef:agent/default_context_mapping ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v4 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v5
ef:activity/change/20260820T1416470405690000/214716 unit_iri ef:agent/unit_normalization ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v5 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v6
ef:activity/change/20260820T1416470405690000/222043 prefLabel ef:agent/normalize_name_case ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v6 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v7
ef:activity/change/20260820T1416470405690000/231135 properties ef:agent/enrich_references ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v7 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v8
ef:activity/change/20260820T1416470405690000/231136 skos_definition ef:agent/enrich_references ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v8 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v9
ef:activity/change/20260820T1416470405690000/231137 references ef:agent/enrich_references ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v9 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v10
ef:activity/change/20260820T1416470405690000/249460 properties ef:agent/rdkit_pre_consensus ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v10 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v11
ef:activity/change/20260820T1416470405690000/254913 altLabel ef:agent/chebi_altlabels ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v11 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v12
ef:activity/change/20260820T1416470405690000/271002 altLabel ef:agent/consensus_match ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v12 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v13
ef:activity/change/20260820T1416470405690000/271003 cas_match_labels ef:agent/consensus_match ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v13 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v14
ef:activity/change/20260820T1416470405690000/274609 properties ef:agent/opsin_iupac ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v14 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v15
ef:activity/change/20260820T1416470405690000/281056 properties ef:agent/rdkit_post_consensus ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v15 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v16
ef:activity/change/20260820T1416470405690000/286816 properties ef:agent/withhold_ambiguous_mass ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v16 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v17
ef:activity/change/20260820T1416470405690000/288113 altLabel ef:agent/strip_catalogue_altlabels ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v17 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v18
ef:activity/change/20260820T1416470405690000/373045 concept_associations ef:agent/carry_associations_onto_flows ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v18 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v19
ef:activity/change/20260820T1416470405690000/388915 properties ef:agent/normalise_property_values ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v19 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v20
ef:activity/change/20260820T1416470405690000/395840 types ef:agent/link_flows_to_their_substance ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v20 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v21
ef:activity/change/20260820T1416470405690000/395841 roles ef:agent/link_flows_to_their_substance ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v21 ef:flow/e1648438-1ecb-4d28-becb-7b053e245c8f/v22

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