Consensus flow list

By field

15 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels, strip_cross_object_altlabels Removed 7 catalogue altLabel value(s): 'A 3000' (grade code), 'F 30' (grade code), 'F 30 (chlorocarbon)' (grade code), 'HCC 30' (grade code), 'NSC 406122' (registry code), 'R 30' (grade code), 'R 30 (refrigerant)' (grade code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=dichloromethane||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'75-09-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-067b5f2cd91dfd1d: {'75-09-2': 'exactMatch'}
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
dcterms_is_replaced_by 1 pipeline.deduplication duplicate of 595b2c87-0c35-426b-8366-df73e101646e
is_replaced_by_uuid 1 pipeline.deduplication duplicate of 595b2c87-0c35-426b-8366-df73e101646e
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
owl_deprecated 1 pipeline.deduplication duplicate of 595b2c87-0c35-426b-8366-df73e101646e
references 1 enrich_references Added references with provenance; cas_numbers=['75-09-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15767']; candidate_pubchem_cids=[6344]; selected_pubchem_cids=[6344]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

23
# Step Field From To Why
7,709 bootstrap_labels prefLabel [{"@value":"dichloromethane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… Bootstrapped prefLabel from legacy name field
7,710 bootstrap_labels name dichloromethane Purged legacy name field to enforce prefLabel usage
7,711 bootstrap_labels synonyms ["300062X","AB1004055","AC1L1MBL","AC1O5DP8","AC1Q3UP8","Aerothene MM","AmbotzSOL-002","Bichloride, Methylene","CH2Cl2"… [] Removed legacy synonyms field in favor of structured labels
102,888 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
102,889 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-aicrhe Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
213,862 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
222,898 normalize_name_case prefLabel [{"@value":"dichloromethane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… [{"@value":"Dichloromethane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
228,693 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
228,694 enrich_references skos_definition [{"@value":"A member of the class of chloromethanes that is methane in which two of the hydrogens have been replaced by… Merged ChEBI/PubChem definitions into skos:definition
228,695 enrich_references references [] [{"@id":"gmelin:1302","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… Added references with provenance; cas_numbers=['75-09-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15767']; candidate_pubchem_cids=[6344]; selected_pubchem_cids=[6344]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
248,752 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… rdkit_pre_consensus from 'C(Cl)Cl'; added: monoisotopic_mass
255,422 chebi_altlabels altLabel [] [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
257,431 strip_cross_object_altlabels altLabel [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… Removed 1 altLabel value(s) that duplicate another flow object's prefLabel: 'Methylene chloride'
265,834 consensus_match altLabel [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… group_key=dichloromethane||dimension=Environmental > media=Air > indoor=Unknown; cas=75-09-2; added Common Chemistry CAS names as altLabel: A 3000, Aerothene MM, F 30, F 30 (chlorocarbon), Freon 30, HCC 30, Khladon 30, MeSH ID: D008752, Metaclen, Methaclean U, Methane, dichloro-, Methylene chloride, NSC 406122, Narkotil, R 30, R 30 (refrigerant), Solaesthin, Soleana VDA, Solmethine; object_uuid=fo-067b5f2cd91dfd1d
265,835 consensus_match cas_match_labels {"75-09-2":"exactMatch"} group_key=dichloromethane||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'75-09-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-067b5f2cd91dfd1d: {'75-09-2': 'exactMatch'}
273,873 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Dichloromethane'
280,262 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… rdkit_post_consensus from 'ClCCl'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
288,836 strip_catalogue_altlabels altLabel [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… Removed 7 catalogue altLabel value(s): 'A 3000' (grade code), 'F 30' (grade code), 'F 30 (chlorocarbon)' (grade code), 'HCC 30' (grade code), 'NSC 406122' (registry code), 'R 30' (grade code), 'R 30 (refrigerant)' (grade code)
293,695 pipeline.deduplication owl_deprecated yes duplicate of 595b2c87-0c35-426b-8366-df73e101646e
293,696 pipeline.deduplication dcterms_is_replaced_by urn:uuid:595b2c87-0c35-426b-8366-df73e101646e duplicate of 595b2c87-0c35-426b-8366-df73e101646e
293,697 pipeline.deduplication is_replaced_by_uuid 595b2c87-0c35-426b-8366-df73e101646e duplicate of 595b2c87-0c35-426b-8366-df73e101646e
388,156 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… typed the way the ontology types it
394,775 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

23 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T1812399309960000/7709 prefLabel ef:agent/bootstrap_labels ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v0 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v1
ef:activity/change/20260820T1812399309960000/7710 name ef:agent/bootstrap_labels ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v1 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v2
ef:activity/change/20260820T1812399309960000/7711 synonyms ef:agent/bootstrap_labels ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v2 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v3
ef:activity/change/20260820T1812399309960000/102888 context ef:agent/default_context_mapping ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v3 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v4
ef:activity/change/20260820T1812399309960000/102889 context_iri ef:agent/default_context_mapping ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v4 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v5
ef:activity/change/20260820T1812399309960000/213862 unit_iri ef:agent/unit_normalization ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v5 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v6
ef:activity/change/20260820T1812399309960000/222898 prefLabel ef:agent/normalize_name_case ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v6 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v7
ef:activity/change/20260820T1812399309960000/228693 properties ef:agent/enrich_references ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v7 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v8
ef:activity/change/20260820T1812399309960000/228694 skos_definition ef:agent/enrich_references ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v8 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v9
ef:activity/change/20260820T1812399309960000/228695 references ef:agent/enrich_references ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v9 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v10
ef:activity/change/20260820T1812399309960000/248752 properties ef:agent/rdkit_pre_consensus ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v10 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v11
ef:activity/change/20260820T1812399309960000/255422 altLabel ef:agent/chebi_altlabels ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v11 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v12
ef:activity/change/20260820T1812399309960000/257431 altLabel ef:agent/strip_cross_object_altlabels ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v12 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v13
ef:activity/change/20260820T1812399309960000/265834 altLabel ef:agent/consensus_match ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v13 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v14
ef:activity/change/20260820T1812399309960000/265835 cas_match_labels ef:agent/consensus_match ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v14 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v15
ef:activity/change/20260820T1812399309960000/273873 properties ef:agent/opsin_iupac ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v15 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v16
ef:activity/change/20260820T1812399309960000/280262 properties ef:agent/rdkit_post_consensus ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v16 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v17
ef:activity/change/20260820T1812399309960000/288836 altLabel ef:agent/strip_catalogue_altlabels ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v17 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v18
ef:activity/change/20260820T1812399309960000/293695 owl_deprecated ef:agent/pipeline.deduplication ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v18 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v19
ef:activity/change/20260820T1812399309960000/293696 dcterms_is_replaced_by ef:agent/pipeline.deduplication ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v19 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v20
ef:activity/change/20260820T1812399309960000/293697 is_replaced_by_uuid ef:agent/pipeline.deduplication ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v20 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v21
ef:activity/change/20260820T1812399309960000/388156 properties ef:agent/normalise_property_values ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v21 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v22
ef:activity/change/20260820T1812399309960000/394775 types ef:agent/link_flows_to_their_substance ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v22 ef:flow/e2fa6882-6555-11dd-ad8b-0800200c9a66/v23

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