Dl-methionine
Everything that changed this flow. Back to the flow
e3a8d3e5-37cb-4a0f-a14c-3e03785a068a
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 4 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 9241' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=dl-methionine||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'59-51-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-9bf3cf70eb1d7c95: {'59-51-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['59-51-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16811']; candidate_pubchem_cids=[876, 887, 6137, 5255805, 6992109]; selected_pubchem_cids=[876]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
19| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 12,223 | bootstrap_labels | prefLabel | — | [{"@value":"dl-methionine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | Bootstrapped prefLabel from legacy name field |
| 12,224 | bootstrap_labels | name | dl-methionine | — | Purged legacy name field to enforce prefLabel usage |
| 12,225 | bootstrap_labels | synonyms | ["organic","dl-methionine"] | [] | Removed legacy synonyms field in favor of structured labels |
| 186,192 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| 186,193 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| 217,386 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,925 | normalize_name_case | prefLabel | [{"@value":"dl-methionine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | [{"@value":"Dl-methionine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 238,799 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H11NO2S"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 238,800 | enrich_references | skos_definition | — | [{"@value":"A sulfur-containing amino acid that is butyric acid bearing an amino substituent at position 2 and a methyl… | Merged ChEBI/PubChem definitions into skos:definition |
| 238,801 | enrich_references | references | [] | [{"@id":"gmelin:3117","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['59-51-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16811']; candidate_pubchem_cids=[876, 887, 6137, 5255805, 6992109]; selected_pubchem_cids=[876]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 256,061 | chebi_altlabels | altLabel | [] | [{"@value":"2-Amino-4-(methylthio)butyric acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… | Added 12 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 266,574 | consensus_match | altLabel | [{"@value":"2-Amino-4-(methylthio)butyric acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… | [{"@value":"2-Amino-4-(methylthio)butyric acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… | group_key=dl-methionine||dimension=Environmental > media=Ground > geography=Unknown; cas=59-51-8; added Common Chemistry CAS names as altLabel: (±)-Methionine, 2-Azaniumyl-4-methylsulfanylbutanoate, <span class="text-smallcaps">DL</span>-2-Amino-4-(methylthio)butyric acid, Acimetion, Amurex, Banthionine, Cynaron, Dyprin, Lactet, Lobamine, Meonine, Meprom M 85, MetAMINO, Methilanin, Methionine, <span class="text-smallcaps">D</smallcap><smallcap>L</span>-, MetiPEARL, Metione, NSC 9241, Neston, Pedameth, Rhodimet NP 99, Smartamine, Smartamine M, Timet, Urimeth, α-Amino-γ-methylmercaptobutyric acid; object_uuid=fo-9bf3cf70eb1d7c95 |
| 266,575 | consensus_match | cas_match_labels | — | {"59-51-8":"exactMatch"} | group_key=dl-methionine||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'59-51-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-9bf3cf70eb1d7c95: {'59-51-8': 'exactMatch'} |
| 276,837 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H11NO2S"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H11NO2S"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Dl-methionine' |
| 283,482 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H11NO2S"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H11NO2S"… | rdkit_post_consensus from 'CSCCC(N)C(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 289,769 | strip_catalogue_altlabels | altLabel | [{"@value":"2-Amino-4-(methylthio)butyric acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… | [{"@value":"2-Amino-4-(methylthio)butyric acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… | Removed 1 catalogue altLabel value(s): 'NSC 9241' (registry code) |
| 374,123 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/e3a8d3e5-37cb-… | associations resolved on the elementary layer |
| 391,196 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H11NO2S"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H11NO2S"… | typed the way the ontology types it |
| 399,124 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
19 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/12223 | prefLabel | ef:agent/bootstrap_labels | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v0 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v1 |
| ef:activity/change/20260822T0600486828500000/12224 | name | ef:agent/bootstrap_labels | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v1 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v2 |
| ef:activity/change/20260822T0600486828500000/12225 | synonyms | ef:agent/bootstrap_labels | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v2 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v3 |
| ef:activity/change/20260822T0600486828500000/186192 | context | ef:agent/default_context_mapping | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v3 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v4 |
| ef:activity/change/20260822T0600486828500000/186193 | context_iri | ef:agent/default_context_mapping | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v4 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v5 |
| ef:activity/change/20260822T0600486828500000/217386 | unit_iri | ef:agent/unit_normalization | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v5 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v6 |
| ef:activity/change/20260822T0600486828500000/223925 | prefLabel | ef:agent/normalize_name_case | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v6 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v7 |
| ef:activity/change/20260822T0600486828500000/238799 | properties | ef:agent/enrich_references | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v7 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v8 |
| ef:activity/change/20260822T0600486828500000/238800 | skos_definition | ef:agent/enrich_references | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v8 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v9 |
| ef:activity/change/20260822T0600486828500000/238801 | references | ef:agent/enrich_references | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v9 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v10 |
| ef:activity/change/20260822T0600486828500000/256061 | altLabel | ef:agent/chebi_altlabels | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v10 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v11 |
| ef:activity/change/20260822T0600486828500000/266574 | altLabel | ef:agent/consensus_match | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v11 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v12 |
| ef:activity/change/20260822T0600486828500000/266575 | cas_match_labels | ef:agent/consensus_match | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v12 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v13 |
| ef:activity/change/20260822T0600486828500000/276837 | properties | ef:agent/opsin_iupac | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v13 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v14 |
| ef:activity/change/20260822T0600486828500000/283482 | properties | ef:agent/rdkit_post_consensus | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v14 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v15 |
| ef:activity/change/20260822T0600486828500000/289769 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v15 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v16 |
| ef:activity/change/20260822T0600486828500000/374123 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v16 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v17 |
| ef:activity/change/20260822T0600486828500000/391196 | properties | ef:agent/normalise_property_values | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v17 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v18 |
| ef:activity/change/20260822T0600486828500000/399124 | types | ef:agent/link_flows_to_their_substance | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v18 | ef:flow/e3a8d3e5-37cb-4a0f-a14c-3e03785a068a/v19 |