Putrescine
Everything that changed this flow. Back to the flow
e6663321-41eb-4729-bb65-6a5bbae4adfb
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 4 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 60545' (registry code) |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | cas=110-60-1; cc_chebi_agreed_name='Putrescine'; object_uuid=fo-07adb46ba7aed984 |
| cas_match_labels | 1 | consensus_match | group_key=butane-1,4-diamine||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'110-60-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-07adb46ba7aed984: {'110-60-1': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['110-60-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17148']; candidate_pubchem_cids=[1045, 70666, 3452892, 73014170]; selected_pubchem_cids=[1045]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 15,102 | bootstrap_labels | prefLabel | — | [{"@value":"butane-1,4-diamine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributed… | Bootstrapped prefLabel from legacy name field |
| 15,103 | bootstrap_labels | name | butane-1,4-diamine | — | Purged legacy name field to enforce prefLabel usage |
| 15,104 | bootstrap_labels | synonyms | ["organic","tetramethylenediamine","1,4-diaminobutaan","1,4-diaminobutane","butaan-1,4-diamine","dab","putrescine"] | [] | Removed legacy synonyms field in favor of structured labels |
| 187,710 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Ocean"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 187,711 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-ocea | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 218,314 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 224,577 | normalize_name_case | prefLabel | [{"@value":"butane-1,4-diamine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributed… | [{"@value":"Butane-1,4-diamine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributed… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 241,448 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H12N2"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 241,449 | enrich_references | skos_definition | — | [{"@value":"A four-carbon alkane-α,ω-diamine. It is obtained by the breakdown of amino acids and is responsible for the… | Merged ChEBI/PubChem definitions into skos:definition |
| 241,450 | enrich_references | references | [] | [{"@id":"bpdb:1393","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"consens… | Added references with provenance; cas_numbers=['110-60-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17148']; candidate_pubchem_cids=[1045, 70666, 3452892, 73014170]; selected_pubchem_cids=[1045]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 252,429 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H12N2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H12N2"],… | rdkit_pre_consensus from 'C(CCN)CN'; added: monoisotopic_mass |
| 256,390 | chebi_altlabels | altLabel | [] | [{"@value":"1,4-Butanediamine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | Added 12 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 264,540 | consensus_match | prefLabel | [{"@value":"Butane-1,4-diamine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributed… | [{"@value":"Putrescine","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"cons… | cas=110-60-1; cc_chebi_agreed_name='Putrescine'; object_uuid=fo-07adb46ba7aed984 |
| 264,541 | consensus_match | altLabel | [{"@value":"1,4-Butanediamine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | [{"@value":"1,4-Butanediamine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | cas=110-60-1; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-07adb46ba7aed984 |
| 264,542 | consensus_match | altLabel | [{"@value":"1,4-Butanediamine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | [{"@value":"1,4-Butanediamine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | group_key=butane-1,4-diamine||dimension=Environmental > media=Ground > geography=Agricultural; cas=110-60-1; added Common Chemistry CAS names as altLabel: 1,4-DAB, 1,4-Diamino-<em>n</em>-butane, MeSH ID: D011700, NSC 60545, Putramine, Putrascine, α,ω-Butanediamine; object_uuid=fo-07adb46ba7aed984 |
| 264,543 | consensus_match | cas_match_labels | — | {"110-60-1":"exactMatch"} | group_key=butane-1,4-diamine||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'110-60-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-07adb46ba7aed984: {'110-60-1': 'exactMatch'} |
| 277,622 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H12N2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H12N2"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Putrescine' |
| 284,321 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H12N2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H12N2"],… | rdkit_post_consensus from 'NCCCCN'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,336 | strip_catalogue_altlabels | altLabel | [{"@value":"1,4-Butanediamine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | [{"@value":"1,4-Butanediamine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… | Removed 1 catalogue altLabel value(s): 'NSC 60545' (registry code) |
| 374,883 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/e6663321-41eb-… | associations resolved on the elementary layer |
| 391,977 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H12N2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H12N2"],… | typed the way the ontology types it |
| 400,249 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/15102 | prefLabel | ef:agent/bootstrap_labels | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v0 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v1 |
| ef:activity/change/20260821T1554374006150000/15103 | name | ef:agent/bootstrap_labels | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v1 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v2 |
| ef:activity/change/20260821T1554374006150000/15104 | synonyms | ef:agent/bootstrap_labels | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v2 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v3 |
| ef:activity/change/20260821T1554374006150000/187710 | context | ef:agent/default_context_mapping | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v3 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v4 |
| ef:activity/change/20260821T1554374006150000/187711 | context_iri | ef:agent/default_context_mapping | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v4 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v5 |
| ef:activity/change/20260821T1554374006150000/218314 | unit_iri | ef:agent/unit_normalization | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v5 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v6 |
| ef:activity/change/20260821T1554374006150000/224577 | prefLabel | ef:agent/normalize_name_case | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v6 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v7 |
| ef:activity/change/20260821T1554374006150000/241448 | properties | ef:agent/enrich_references | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v7 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v8 |
| ef:activity/change/20260821T1554374006150000/241449 | skos_definition | ef:agent/enrich_references | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v8 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v9 |
| ef:activity/change/20260821T1554374006150000/241450 | references | ef:agent/enrich_references | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v9 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v10 |
| ef:activity/change/20260821T1554374006150000/252429 | properties | ef:agent/rdkit_pre_consensus | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v10 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v11 |
| ef:activity/change/20260821T1554374006150000/256390 | altLabel | ef:agent/chebi_altlabels | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v11 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v12 |
| ef:activity/change/20260821T1554374006150000/264540 | prefLabel | ef:agent/consensus_match | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v12 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v13 |
| ef:activity/change/20260821T1554374006150000/264541 | altLabel | ef:agent/consensus_match | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v13 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v14 |
| ef:activity/change/20260821T1554374006150000/264542 | altLabel | ef:agent/consensus_match | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v14 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v15 |
| ef:activity/change/20260821T1554374006150000/264543 | cas_match_labels | ef:agent/consensus_match | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v15 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v16 |
| ef:activity/change/20260821T1554374006150000/277622 | properties | ef:agent/opsin_iupac | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v16 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v17 |
| ef:activity/change/20260821T1554374006150000/284321 | properties | ef:agent/rdkit_post_consensus | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v17 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v18 |
| ef:activity/change/20260821T1554374006150000/290336 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v18 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v19 |
| ef:activity/change/20260821T1554374006150000/374883 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v19 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v20 |
| ef:activity/change/20260821T1554374006150000/391977 | properties | ef:agent/normalise_property_values | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v20 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v21 |
| ef:activity/change/20260821T1554374006150000/400249 | types | ef:agent/link_flows_to_their_substance | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v21 | ef:flow/e6663321-41eb-4729-bb65-6a5bbae4adfb/v22 |