Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'NSC 1942' (registry code)
prefLabel 2 bootstrap_labels, consensus_match cas=501-30-4; cc_chebi_agreed_name='Kojic acid'; object_uuid=fo-724db901332c61e2
cas_match_labels 1 consensus_match group_key=5-hydroxy-2-hydroxymethyl-4-pyrone||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'501-30-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-724db901332c61e2: {'501-30-4': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['501-30-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_43572']; candidate_pubchem_cids=[3840, 4946, 87763875]; selected_pubchem_cids=[3840]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

21
# Step Field From To Why
11,970 bootstrap_labels prefLabel [{"@value":"5-hydroxy-2-hydroxymethyl-4-pyrone","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","pr… Bootstrapped prefLabel from legacy name field
11,971 bootstrap_labels name 5-hydroxy-2-hydroxymethyl-4-pyrone Purged legacy name field to enforce prefLabel usage
11,972 bootstrap_labels synonyms ["2-(Hydroxymethyl)-5-hydroxy-4H-pyran-4-one","2-Hydroxymethyl-5-Hydroxy-??-Pyrone","2-Hydroxymethyl-5-hydroxy-gamma-py… [] Removed legacy synonyms field in favor of structured labels
188,346 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
188,347 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
217,306 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
238,565 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O4"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
238,566 enrich_references skos_definition [{"@value":"A pyranone that is 4H-pyran substituted by a hydroxy group at position 5, a hydroxymethyl group at position… Merged ChEBI/PubChem definitions into skos:definition
238,567 enrich_references references [] [{"@id":"beilstein:120895","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… Added references with provenance; cas_numbers=['501-30-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_43572']; candidate_pubchem_cids=[3840, 4946, 87763875]; selected_pubchem_cids=[3840]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
251,589 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O4"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O4"],"… rdkit_pre_consensus from 'C1=C(OC=C(C1=O)O)CO'; added: monoisotopic_mass
256,032 chebi_altlabels altLabel [] [{"@value":"5-Hydroxy-2-(hydroxymethyl)-4-pyrone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","p… Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
263,098 consensus_match prefLabel [{"@value":"5-hydroxy-2-hydroxymethyl-4-pyrone","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","pr… [{"@value":"Kojic acid","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"cons… cas=501-30-4; cc_chebi_agreed_name='Kojic acid'; object_uuid=fo-724db901332c61e2
263,099 consensus_match altLabel [{"@value":"5-Hydroxy-2-(hydroxymethyl)-4-pyrone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","p… [{"@value":"5-Hydroxy-2-(hydroxymethyl)-4-pyrone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","p… cas=501-30-4; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-724db901332c61e2
263,100 consensus_match altLabel [{"@value":"5-Hydroxy-2-(hydroxymethyl)-4-pyrone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","p… [{"@value":"5-Hydroxy-2-(hydroxymethyl)-4-pyrone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","p… group_key=5-hydroxy-2-hydroxymethyl-4-pyrone||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); cas=501-30-4; added Common Chemistry CAS names as altLabel: 2-(Hydroxymethyl)-5-hydroxy-4<em>H</em>-pyran-4-one, 4<em>H</em>-Pyran-4-one, 5-hydroxy-2-(hydroxymethyl)-, 5-Hydroxy-2-(hydroxymethyl)-4<em>H</em>-pyranone, 5-Hydroxy-2-hydroxymethyl-1,4-pyrone, 5-Hydroxy-2-hydroxymethylpyran-4-one, NSC 1942; object_uuid=fo-724db901332c61e2
263,101 consensus_match cas_match_labels {"501-30-4":"exactMatch"} group_key=5-hydroxy-2-hydroxymethyl-4-pyrone||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'501-30-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-724db901332c61e2: {'501-30-4': 'exactMatch'}
276,771 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O4"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O4"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '5-Hydroxy-2-(hydroxymethyl)-4-pyrone'
283,407 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O4"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O4"],"… rdkit_post_consensus from 'O=c1cc(CO)occ1O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
289,717 strip_catalogue_altlabels altLabel [{"@value":"5-Hydroxy-2-(hydroxymethyl)-4-pyrone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","p… [{"@value":"5-Hydroxy-2-(hydroxymethyl)-4-pyrone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","p… Removed 1 catalogue altLabel value(s): 'NSC 1942' (registry code)
375,201 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/e77a609b-ec91-… associations resolved on the elementary layer
391,125 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O4"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O4"],"… typed the way the ontology types it
399,027 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

21 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260822T0600486828500000/11970 prefLabel ef:agent/bootstrap_labels ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v0 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v1
ef:activity/change/20260822T0600486828500000/11971 name ef:agent/bootstrap_labels ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v1 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v2
ef:activity/change/20260822T0600486828500000/11972 synonyms ef:agent/bootstrap_labels ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v2 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v3
ef:activity/change/20260822T0600486828500000/188346 context ef:agent/default_context_mapping ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v3 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v4
ef:activity/change/20260822T0600486828500000/188347 context_iri ef:agent/default_context_mapping ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v4 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v5
ef:activity/change/20260822T0600486828500000/217306 unit_iri ef:agent/unit_normalization ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v5 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v6
ef:activity/change/20260822T0600486828500000/238565 properties ef:agent/enrich_references ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v6 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v7
ef:activity/change/20260822T0600486828500000/238566 skos_definition ef:agent/enrich_references ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v7 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v8
ef:activity/change/20260822T0600486828500000/238567 references ef:agent/enrich_references ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v8 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v9
ef:activity/change/20260822T0600486828500000/251589 properties ef:agent/rdkit_pre_consensus ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v9 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v10
ef:activity/change/20260822T0600486828500000/256032 altLabel ef:agent/chebi_altlabels ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v10 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v11
ef:activity/change/20260822T0600486828500000/263098 prefLabel ef:agent/consensus_match ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v11 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v12
ef:activity/change/20260822T0600486828500000/263099 altLabel ef:agent/consensus_match ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v12 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v13
ef:activity/change/20260822T0600486828500000/263100 altLabel ef:agent/consensus_match ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v13 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v14
ef:activity/change/20260822T0600486828500000/263101 cas_match_labels ef:agent/consensus_match ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v14 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v15
ef:activity/change/20260822T0600486828500000/276771 properties ef:agent/opsin_iupac ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v15 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v16
ef:activity/change/20260822T0600486828500000/283407 properties ef:agent/rdkit_post_consensus ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v16 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v17
ef:activity/change/20260822T0600486828500000/289717 altLabel ef:agent/strip_catalogue_altlabels ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v17 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v18
ef:activity/change/20260822T0600486828500000/375201 concept_associations ef:agent/carry_associations_onto_flows ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v18 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v19
ef:activity/change/20260822T0600486828500000/391125 properties ef:agent/normalise_property_values ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v19 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v20
ef:activity/change/20260822T0600486828500000/399027 types ef:agent/link_flows_to_their_substance ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v20 ef:flow/e77a609b-ec91-4a58-b062-9885a4d0577a/v21

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