Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 6 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus, withhold_ambiguous_mass typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, dedupe_altlabels Deduplicated altLabel values and removed entries matching prefLabel
prefLabel 2 bootstrap_labels, consensus_match cas=14882-18-9; cc_chebi_agreed_name='Bismuth subsalicylate'; object_uuid=fo-dfca8bb1d49333dc
cas_match_labels 1 consensus_match group_key=2-hydroxy-4h-1,3,2-benzodioxabismin-4-one||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'14882-18-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-dfca8bb1d49333dc: {'14882-18-9': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['14882-18-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_261649']; candidate_pubchem_cids=[16682734, 18502837, 50930981, 53629521, 54686708, 175647778]; selected_pubchem_cids=[16682734]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
4,068 bootstrap_labels prefLabel [{"@value":"2-hydroxy-4h-1,3,2-benzodioxabismin-4-one","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labe… Bootstrapped prefLabel from legacy name field
4,069 bootstrap_labels name 2-hydroxy-4h-1,3,2-benzodioxabismin-4-one Purged legacy name field to enforce prefLabel usage
4,070 bootstrap_labels synonyms ["organometallic","bismuthoxidesalicylate","bismuthsubsalicylate"] [] Removed legacy synonyms field in favor of structured labels
190,818 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Surface water"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
190,819 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-suwa Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
214,699 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
231,096 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H5BiO4",… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
231,097 enrich_references skos_definition [{"@value":"A bismuth salt of salicylic acid.","@language":"en","provenance":{"prov:wasGeneratedBy":"enrich_references.… Merged ChEBI/PubChem definitions into skos:definition
231,098 enrich_references references [] [{"@id":"drugcentral:4257","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… Added references with provenance; cas_numbers=['14882-18-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_261649']; candidate_pubchem_cids=[16682734, 18502837, 50930981, 53629521, 54686708, 175647778]; selected_pubchem_cids=[16682734]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
249,444 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H5BiO4",… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H5BiO4",… rdkit_pre_consensus from 'C1=CC=C2C(=C1)C(=O)O[Bi]O2.O'; added: molecular_mass, monoisotopic_mass
254,899 chebi_altlabels altLabel [] [{"@value":"2-Hydroxy-benzo[1,3,2]dioxabismin-4-one","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels"… Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
260,913 consensus_match prefLabel [{"@value":"2-hydroxy-4h-1,3,2-benzodioxabismin-4-one","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labe… [{"@value":"Bismuth subsalicylate","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttribut… cas=14882-18-9; cc_chebi_agreed_name='Bismuth subsalicylate'; object_uuid=fo-dfca8bb1d49333dc
260,914 consensus_match altLabel [{"@value":"2-Hydroxy-benzo[1,3,2]dioxabismin-4-one","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels"… [{"@value":"2-Hydroxy-benzo[1,3,2]dioxabismin-4-one","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels"… cas=14882-18-9; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-dfca8bb1d49333dc
260,915 consensus_match altLabel [{"@value":"2-Hydroxy-benzo[1,3,2]dioxabismin-4-one","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels"… [{"@value":"2-Hydroxy-benzo[1,3,2]dioxabismin-4-one","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels"… group_key=2-hydroxy-4h-1,3,2-benzodioxabismin-4-one||dimension=Environmental > media=Air > strata=Long-term; cas=14882-18-9; added Common Chemistry CAS names as altLabel: 4<em>H</em>-1,3,2-Benzodioxabismin-4-one, 2-hydroxy-, Bismogenol Tosse Inj., Bismuth, (2-hydroxybenzoato-<em>O</em><sup>1</sup>,<em>O</em><sup>2</sup>)oxo-, Bismuth, oxo(salicylato)-, Peptosil; object_uuid=fo-dfca8bb1d49333dc
260,916 consensus_match cas_match_labels {"14882-18-9":"exactMatch"} group_key=2-hydroxy-4h-1,3,2-benzodioxabismin-4-one||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'14882-18-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-dfca8bb1d49333dc: {'14882-18-9': 'exactMatch'}
274,576 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H5BiO4",… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H5BiO4",… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '2-Hydroxy-benzo[1,3,2]dioxabismin-4-one'
281,027 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H5BiO4",… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H5BiO4",… rdkit_post_consensus from 'O=C1[O][Bi]([OH])[O]c2ccccc21'; added: monoisotopic_mass; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass
286,795 withhold_ambiguous_mass properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H5BiO4",… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H5BiO4",… withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it
292,189 dedupe_altlabels altLabel [{"@value":"2-Hydroxy-benzo[1,3,2]dioxabismin-4-one","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels"… [{"@value":"2-Hydroxy-benzo[1,3,2]dioxabismin-4-one","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels"… Deduplicated altLabel values and removed entries matching prefLabel
376,439 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/ebb5d757-92df-… associations resolved on the elementary layer
388,883 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H5BiO4",… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H5BiO4",… typed the way the ontology types it
395,803 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260822T0600486828500000/4068 prefLabel ef:agent/bootstrap_labels ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v0 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v1
ef:activity/change/20260822T0600486828500000/4069 name ef:agent/bootstrap_labels ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v1 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v2
ef:activity/change/20260822T0600486828500000/4070 synonyms ef:agent/bootstrap_labels ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v2 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v3
ef:activity/change/20260822T0600486828500000/190818 context ef:agent/default_context_mapping ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v3 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v4
ef:activity/change/20260822T0600486828500000/190819 context_iri ef:agent/default_context_mapping ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v4 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v5
ef:activity/change/20260822T0600486828500000/214699 unit_iri ef:agent/unit_normalization ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v5 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v6
ef:activity/change/20260822T0600486828500000/231096 properties ef:agent/enrich_references ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v6 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v7
ef:activity/change/20260822T0600486828500000/231097 skos_definition ef:agent/enrich_references ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v7 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v8
ef:activity/change/20260822T0600486828500000/231098 references ef:agent/enrich_references ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v8 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v9
ef:activity/change/20260822T0600486828500000/249444 properties ef:agent/rdkit_pre_consensus ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v9 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v10
ef:activity/change/20260822T0600486828500000/254899 altLabel ef:agent/chebi_altlabels ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v10 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v11
ef:activity/change/20260822T0600486828500000/260913 prefLabel ef:agent/consensus_match ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v11 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v12
ef:activity/change/20260822T0600486828500000/260914 altLabel ef:agent/consensus_match ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v12 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v13
ef:activity/change/20260822T0600486828500000/260915 altLabel ef:agent/consensus_match ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v13 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v14
ef:activity/change/20260822T0600486828500000/260916 cas_match_labels ef:agent/consensus_match ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v14 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v15
ef:activity/change/20260822T0600486828500000/274576 properties ef:agent/opsin_iupac ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v15 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v16
ef:activity/change/20260822T0600486828500000/281027 properties ef:agent/rdkit_post_consensus ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v16 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v17
ef:activity/change/20260822T0600486828500000/286795 properties ef:agent/withhold_ambiguous_mass ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v17 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v18
ef:activity/change/20260822T0600486828500000/292189 altLabel ef:agent/dedupe_altlabels ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v18 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v19
ef:activity/change/20260822T0600486828500000/376439 concept_associations ef:agent/carry_associations_onto_flows ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v19 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v20
ef:activity/change/20260822T0600486828500000/388883 properties ef:agent/normalise_property_values ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v20 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v21
ef:activity/change/20260822T0600486828500000/395803 types ef:agent/link_flows_to_their_substance ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v21 ef:flow/ebb5d757-92df-452d-b387-93367ebdeef8/v22

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