Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 6 enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus the substance's answer, copied onto its flow
altLabel 4 chebi_altlabels, consensus_match, dedupe_altlabels Deduplicated altLabel values and removed entries matching prefLabel
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=14280-50-3; cc_chebi_agreed_name='Lead(2+)'; object_uuid=fo-250b361dd7295454
cas_match_labels 1 consensus_match group_key=lead(ii)||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi']; cas_sources={'14280-50-3': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-250b361dd7295454: {'14280-50-3': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['14280-50-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_49807']; candidate_pubchem_cids=[73212, 195327]; selected_pubchem_cids=[73212]; formula_similarity_expected=['Pb']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

23
# Step Field From To Why
677 bootstrap_labels prefLabel [{"@value":"lead (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… Bootstrapped prefLabel from legacy name field
678 bootstrap_labels name lead (ii) Purged legacy name field to enforce prefLabel usage
679 bootstrap_labels synonyms ["element in usetox"] [] Removed legacy synonyms field in favor of structured labels
192,108 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Non-agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil
192,109 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-noag Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil
213,566 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
221,258 normalize_name_case prefLabel [{"@value":"lead (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… [{"@value":"Lead (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
227,820 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Pb","Pb+2"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
227,821 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
227,822 enrich_references references [] [{"@id":"gmelin:6861","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… Added references with provenance; cas_numbers=['14280-50-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_49807']; candidate_pubchem_cids=[73212, 195327]; selected_pubchem_cids=[73212]; formula_similarity_expected=['Pb']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
248,499 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Pb","Pb+2"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Pb","Pb+2"… rdkit_pre_consensus from '[Pb+2]'; added: monoisotopic_mass
254,471 chebi_altlabels altLabel [] [{"@value":"Lead, ion (Pb2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… Added 13 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
268,362 consensus_match prefLabel [{"@value":"Lead (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… [{"@value":"Lead(2+)","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"consen… cas=14280-50-3; cc_chebi_agreed_name='Lead(2+)'; object_uuid=fo-250b361dd7295454
268,363 consensus_match altLabel [{"@value":"Lead, ion (Pb2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… [{"@value":"Lead, ion (Pb2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… cas=14280-50-3; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-250b361dd7295454
268,364 consensus_match altLabel [{"@value":"Lead, ion (Pb2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… [{"@value":"Lead, ion (Pb2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… group_key=lead(ii)||dimension=Environmental > media=Water > water_body=Ocean; cas=14280-50-3; added Common Chemistry CAS names as altLabel: Lead (Pb<sup>2+</sup>), Pb++; object_uuid=fo-250b361dd7295454
268,365 consensus_match cas_match_labels {"14280-50-3":"exactMatch"} group_key=lead(ii)||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi']; cas_sources={'14280-50-3': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-250b361dd7295454: {'14280-50-3': 'exactMatch'}
273,640 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Pb","Pb+2"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Pb","Pb+2"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Lead(2+)'
280,004 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Pb","Pb+2"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Pb","Pb+2"… rdkit_post_consensus from '[Pb+2]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
292,004 dedupe_altlabels altLabel [{"@value":"Lead, ion (Pb2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… [{"@value":"Lead, ion (Pb2+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… Deduplicated altLabel values and removed entries matching prefLabel
377,106 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/ee20a373-e08f-… associations resolved on the elementary layer
387,917 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Pb","Pb+2"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Pb","Pb+2"… typed the way the ontology types it
394,455 link_flows_to_their_substance types ["https://w3id.org/chemrof/AtomCation"] the substance's answer, copied onto its flow
394,456 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Pb","Pb+2"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Pb","Pb+2"… the substance's answer, copied onto its flow

PROV-O trail

23 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/677 prefLabel ef:agent/bootstrap_labels ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v0 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v1
ef:activity/change/20260820T0738569779880000/678 name ef:agent/bootstrap_labels ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v1 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v2
ef:activity/change/20260820T0738569779880000/679 synonyms ef:agent/bootstrap_labels ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v2 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v3
ef:activity/change/20260820T0738569779880000/192108 context ef:agent/default_context_mapping ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v3 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v4
ef:activity/change/20260820T0738569779880000/192109 context_iri ef:agent/default_context_mapping ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v4 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v5
ef:activity/change/20260820T0738569779880000/213566 unit_iri ef:agent/unit_normalization ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v5 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v6
ef:activity/change/20260820T0738569779880000/221258 prefLabel ef:agent/normalize_name_case ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v6 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v7
ef:activity/change/20260820T0738569779880000/227820 properties ef:agent/enrich_references ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v7 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v8
ef:activity/change/20260820T0738569779880000/227821 skos_definition ef:agent/enrich_references ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v8 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v9
ef:activity/change/20260820T0738569779880000/227822 references ef:agent/enrich_references ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v9 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v10
ef:activity/change/20260820T0738569779880000/248499 properties ef:agent/rdkit_pre_consensus ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v10 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v11
ef:activity/change/20260820T0738569779880000/254471 altLabel ef:agent/chebi_altlabels ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v11 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v12
ef:activity/change/20260820T0738569779880000/268362 prefLabel ef:agent/consensus_match ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v12 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v13
ef:activity/change/20260820T0738569779880000/268363 altLabel ef:agent/consensus_match ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v13 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v14
ef:activity/change/20260820T0738569779880000/268364 altLabel ef:agent/consensus_match ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v14 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v15
ef:activity/change/20260820T0738569779880000/268365 cas_match_labels ef:agent/consensus_match ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v15 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v16
ef:activity/change/20260820T0738569779880000/273640 properties ef:agent/opsin_iupac ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v16 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v17
ef:activity/change/20260820T0738569779880000/280004 properties ef:agent/rdkit_post_consensus ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v17 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v18
ef:activity/change/20260820T0738569779880000/292004 altLabel ef:agent/dedupe_altlabels ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v18 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v19
ef:activity/change/20260820T0738569779880000/377106 concept_associations ef:agent/carry_associations_onto_flows ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v19 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v20
ef:activity/change/20260820T0738569779880000/387917 properties ef:agent/normalise_property_values ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v20 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v21
ef:activity/change/20260820T0738569779880000/394455 types ef:agent/link_flows_to_their_substance ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v21 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v22
ef:activity/change/20260820T0738569779880000/394456 properties ef:agent/link_flows_to_their_substance ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v22 ef:flow/ee20a373-e08f-4932-98cf-5521977c4670/v23

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