Urea
Everything that changed this flow. Back to the flow
ef39d251-2701-441e-8b6a-06b93d5d332d
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 10 catalogue altLabel value(s): 'AUS 32' (grade code), 'GS 013' (grade code), 'HY 741' (grade code), 'NSC 34375' (registry code), 'Optigen 1200' (trade name), 'S 30375' (grade code), 'SGN 250' (grade code), 'U 6209' (grade code), 'U 6504' (grade code), 'UR 2T' (grade code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=urea||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'57-13-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-34ce91958128840d: {'57-13-6': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['57-13-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16199']; candidate_pubchem_cids=[1176, 1492, 21982856, 71309326]; selected_pubchem_cids=[1176]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 17,663 | bootstrap_labels | prefLabel | — | [{"@value":"urea","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensus… | Bootstrapped prefLabel from legacy name field |
| 17,664 | bootstrap_labels | name | urea | — | Purged legacy name field to enforce prefLabel usage |
| 17,665 | bootstrap_labels | synonyms | ["AB1002498","AC1L1AWB","AC1Q50ED","Alphadrate","Aqua Care","Aqua Care HP","Aquacare","Aquacare HP","Aquadrate","B-I-K"… | [] | Removed legacy synonyms field in favor of structured labels |
| 192,756 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 192,757 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 219,129 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,146 | normalize_name_case | prefLabel | [{"@value":"urea","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensus… | [{"@value":"Urea","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensus… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 243,731 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH4N2O"],"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 243,732 | enrich_references | skos_definition | — | [{"@value":"A carbonyl group with two C-bound amine groups. The commercially available fertilizer has an analysis of 46… | Merged ChEBI/PubChem definitions into skos:definition |
| 243,733 | enrich_references | references | [] | [{"@id":"drugcentral:4264","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['57-13-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16199']; candidate_pubchem_cids=[1176, 1492, 21982856, 71309326]; selected_pubchem_cids=[1176]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,092 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH4N2O"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH4N2O"],"… | rdkit_pre_consensus from 'C(=O)(N)N'; added: monoisotopic_mass |
| 256,711 | chebi_altlabels | altLabel | [] | [{"@value":"1728","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Added 10 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 273,219 | consensus_match | altLabel | [{"@value":"1728","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"1728","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | group_key=urea||dimension=Environmental > media=Ground > geography=Unknown; cas=57-13-6; added Common Chemistry CAS names as altLabel: AUS 32, AdBlue, Aquacare, Aquadrate, B-I-K, Basodexan, Benural 70, Carbamimidic acid, Carbonyl diamide, Carmol 40, Cellpaste K 4, Cellton NP, Duration III, ESN, Elaqua XX, GS 013, HY 741, Hyanit, Isourea, Keratinamin, Keratinamin Kowa, Low Biuret Urea, MeSH ID: D014508, Monuron-urea polymer, NSC 34375, Nutraplus, Onychomal, Onyster, Optigen 1200, Optigen II, Pastaron, Pastaron 10, Pastaron 20, Pastaron 20 soft, Pastaron soft, Pseudourea, Rubinol ST 010, S 30375, SGN 250, SP-AD 0052, U 6209, U 6504, UR 2T, Ultra Low Biuret Urea, Ureaphil, Ureophil, Urepeal, Urepeal L, Urepearl, Urevert, Uria, Uroderm, Varioform II; object_uuid=fo-34ce91958128840d |
| 273,220 | consensus_match | cas_match_labels | — | {"57-13-6":"exactMatch"} | group_key=urea||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'57-13-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-34ce91958128840d: {'57-13-6': 'exactMatch'} |
| 278,305 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH4N2O"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH4N2O"],"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Urea' |
| 285,058 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH4N2O"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH4N2O"],"… | rdkit_post_consensus from 'NC(N)=O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,843 | strip_catalogue_altlabels | altLabel | [{"@value":"1728","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"1728","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Removed 10 catalogue altLabel value(s): 'AUS 32' (grade code), 'GS 013' (grade code), 'HY 741' (grade code), 'NSC 34375' (registry code), 'Optigen 1200' (trade name), 'S 30375' (grade code), 'SGN 250' (grade code), 'U 6209' (grade code), 'U 6504' (grade code), 'UR 2T' (grade code) |
| 377,430 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/ef39d251-2701-… | associations resolved on the elementary layer |
| 392,667 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH4N2O"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH4N2O"],"… | typed the way the ontology types it |
| 401,244 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 401,245 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_33286","rdfs:label":"agrochemical","http://www.w3.org/2004/02/skos/core#d… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/17663 | prefLabel | ef:agent/bootstrap_labels | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v0 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v1 |
| ef:activity/change/20260820T0738569779880000/17664 | name | ef:agent/bootstrap_labels | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v1 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v2 |
| ef:activity/change/20260820T0738569779880000/17665 | synonyms | ef:agent/bootstrap_labels | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v2 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v3 |
| ef:activity/change/20260820T0738569779880000/192756 | context | ef:agent/default_context_mapping | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v3 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v4 |
| ef:activity/change/20260820T0738569779880000/192757 | context_iri | ef:agent/default_context_mapping | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v4 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v5 |
| ef:activity/change/20260820T0738569779880000/219129 | unit_iri | ef:agent/unit_normalization | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v5 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v6 |
| ef:activity/change/20260820T0738569779880000/225146 | prefLabel | ef:agent/normalize_name_case | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v6 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v7 |
| ef:activity/change/20260820T0738569779880000/243731 | properties | ef:agent/enrich_references | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v7 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v8 |
| ef:activity/change/20260820T0738569779880000/243732 | skos_definition | ef:agent/enrich_references | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v8 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v9 |
| ef:activity/change/20260820T0738569779880000/243733 | references | ef:agent/enrich_references | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v9 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v10 |
| ef:activity/change/20260820T0738569779880000/253092 | properties | ef:agent/rdkit_pre_consensus | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v10 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v11 |
| ef:activity/change/20260820T0738569779880000/256711 | altLabel | ef:agent/chebi_altlabels | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v11 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v12 |
| ef:activity/change/20260820T0738569779880000/273219 | altLabel | ef:agent/consensus_match | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v12 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v13 |
| ef:activity/change/20260820T0738569779880000/273220 | cas_match_labels | ef:agent/consensus_match | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v13 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v14 |
| ef:activity/change/20260820T0738569779880000/278305 | properties | ef:agent/opsin_iupac | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v14 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v15 |
| ef:activity/change/20260820T0738569779880000/285058 | properties | ef:agent/rdkit_post_consensus | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v15 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v16 |
| ef:activity/change/20260820T0738569779880000/290843 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v16 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v17 |
| ef:activity/change/20260820T0738569779880000/377430 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v17 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v18 |
| ef:activity/change/20260820T0738569779880000/392667 | properties | ef:agent/normalise_property_values | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v18 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v19 |
| ef:activity/change/20260820T0738569779880000/401244 | types | ef:agent/link_flows_to_their_substance | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v19 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v20 |
| ef:activity/change/20260820T0738569779880000/401245 | roles | ef:agent/link_flows_to_their_substance | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v20 | ef:flow/ef39d251-2701-441e-8b6a-06b93d5d332d/v21 |