Dichromate
Everything that changed this flow. Back to the flow
f08d395e-6ef0-4ef0-af77-e40b9d5e5a07
By field
16 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| cas_match_labels | 1 | consensus_match | group_key=dichromate||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi']; cas_sources={'13907-47-6': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-3688a4f4f00321df: {'13907-47-6': 'exactMatch'} |
| cas_number_sources | 1 | commonchem_cas_review | Attach provenance for Common Chemistry CAS fill-ins |
| cas_numbers | 1 | commonchem_cas_review | Set CAS from Common Chemistry exact name match (flow had none): 13907-47-6 |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| dcterms_is_replaced_by | 1 | pipeline.deduplication | duplicate of 5a630ec5-549b-458c-984c-f5f8faf7f638 |
| is_replaced_by_uuid | 1 | pipeline.deduplication | duplicate of 5a630ec5-549b-458c-984c-f5f8faf7f638 |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| owl_deprecated | 1 | pipeline.deduplication | duplicate of 5a630ec5-549b-458c-984c-f5f8faf7f638 |
| prefLabel | 1 | bootstrap_labels | Bootstrapped prefLabel from legacy name field |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['13907-47-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_33141']; candidate_pubchem_cids=[]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 633 | bootstrap_labels | prefLabel | — | [{"@value":"Dichromate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Bootstrapped prefLabel from legacy name field |
| 634 | bootstrap_labels | name | Dichromate | — | Purged legacy name field to enforce prefLabel usage |
| 103,492 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Surface water"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 103,493 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-suwa | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 213,551 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 226,686 | commonchem_cas_review | cas_numbers | [] | ["13907-47-6"] | Set CAS from Common Chemistry exact name match (flow had none): 13907-47-6 |
| 226,687 | commonchem_cas_review | cas_number_sources | — | {"13907-47-6":{"prov:wasGeneratedBy":"commonchem_cas_review","prov:wasAttributedTo":"consensus-flow-list","prov:hadPrim… | Attach provenance for Common Chemistry CAS fill-ins |
| 227,776 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Cr2O7"],"a… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=0) |
| 227,777 | enrich_references | skos_definition | — | [{"@value":"A divalent inorganic anion obtained by removal of both protons from dichromic acid.","@language":"en","prov… | Merged ChEBI/PubChem definitions into skos:definition |
| 227,778 | enrich_references | references | [] | [{"@id":"gmelin:26867","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… | Added references with provenance; cas_numbers=['13907-47-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_33141']; candidate_pubchem_cids=[]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 248,485 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Cr2O7"],"a… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Cr2O7","Cr… | rdkit_pre_consensus from '[O]=[Cr](=[O])([O-])[O][Cr](=[O])(=[O])[O-]'; added: molecular_formula, monoisotopic_mass |
| 254,465 | chebi_altlabels | altLabel | [] | [{"@value":"Cr2O7(2-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 265,867 | consensus_match | altLabel | [{"@value":"Cr2O7(2-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | [{"@value":"Cr2O7(2-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | group_key=dichromate||dimension=Environmental > media=Water > water_body=Unknown; cas=13907-47-6; added Common Chemistry CAS names as altLabel: Chromate (Cr<sub>2</sub>O<sub>7</sub><sup>2-</sup>), Chromic acid (H<sub>2</sub>Cr<sub>2</sub>O<sub>7</sub>), ion(2-), Dichromate (Cr<sub>2</sub>O<sub>7</sub><sup>2-</sup>), Dichromate ion, Dichromate ion (Cr<sub>2</sub>O<sub>7</sub><sup>2-</sup>); object_uuid=fo-3688a4f4f00321df |
| 265,868 | consensus_match | cas_match_labels | — | {"13907-47-6":"exactMatch"} | group_key=dichromate||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi']; cas_sources={'13907-47-6': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-3688a4f4f00321df: {'13907-47-6': 'exactMatch'} |
| 273,627 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Cr2O7","Cr… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Cr2O7","Cr… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Dichromate' |
| 279,990 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Cr2O7","Cr… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Cr2O7","Cr… | rdkit_post_consensus from '[O]=[Cr](=[O])([O-])[O][Cr](=[O])(=[O])[O-]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,002 | dedupe_altlabels | altLabel | [{"@value":"Cr2O7(2-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | [{"@value":"Cr2O7(2-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"conse… | Deduplicated altLabel values and removed entries matching prefLabel |
| 293,731 | pipeline.deduplication | owl_deprecated | — | yes | duplicate of 5a630ec5-549b-458c-984c-f5f8faf7f638 |
| 293,732 | pipeline.deduplication | dcterms_is_replaced_by | — | urn:uuid:5a630ec5-549b-458c-984c-f5f8faf7f638 | duplicate of 5a630ec5-549b-458c-984c-f5f8faf7f638 |
| 293,733 | pipeline.deduplication | is_replaced_by_uuid | — | 5a630ec5-549b-458c-984c-f5f8faf7f638 | duplicate of 5a630ec5-549b-458c-984c-f5f8faf7f638 |
| 387,903 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Cr2O7","Cr… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Cr2O7","Cr… | typed the way the ontology types it |
| 394,438 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/MolecularAnion"] | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/633 | prefLabel | ef:agent/bootstrap_labels | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v0 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v1 |
| ef:activity/change/20260820T0738569779880000/634 | name | ef:agent/bootstrap_labels | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v1 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v2 |
| ef:activity/change/20260820T0738569779880000/103492 | context | ef:agent/default_context_mapping | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v2 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v3 |
| ef:activity/change/20260820T0738569779880000/103493 | context_iri | ef:agent/default_context_mapping | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v3 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v4 |
| ef:activity/change/20260820T0738569779880000/213551 | unit_iri | ef:agent/unit_normalization | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v4 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v5 |
| ef:activity/change/20260820T0738569779880000/226686 | cas_numbers | ef:agent/commonchem_cas_review | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v5 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v6 |
| ef:activity/change/20260820T0738569779880000/226687 | cas_number_sources | ef:agent/commonchem_cas_review | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v6 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v7 |
| ef:activity/change/20260820T0738569779880000/227776 | properties | ef:agent/enrich_references | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v7 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v8 |
| ef:activity/change/20260820T0738569779880000/227777 | skos_definition | ef:agent/enrich_references | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v8 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v9 |
| ef:activity/change/20260820T0738569779880000/227778 | references | ef:agent/enrich_references | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v9 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v10 |
| ef:activity/change/20260820T0738569779880000/248485 | properties | ef:agent/rdkit_pre_consensus | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v10 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v11 |
| ef:activity/change/20260820T0738569779880000/254465 | altLabel | ef:agent/chebi_altlabels | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v11 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v12 |
| ef:activity/change/20260820T0738569779880000/265867 | altLabel | ef:agent/consensus_match | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v12 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v13 |
| ef:activity/change/20260820T0738569779880000/265868 | cas_match_labels | ef:agent/consensus_match | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v13 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v14 |
| ef:activity/change/20260820T0738569779880000/273627 | properties | ef:agent/opsin_iupac | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v14 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v15 |
| ef:activity/change/20260820T0738569779880000/279990 | properties | ef:agent/rdkit_post_consensus | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v15 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v16 |
| ef:activity/change/20260820T0738569779880000/292002 | altLabel | ef:agent/dedupe_altlabels | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v16 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v17 |
| ef:activity/change/20260820T0738569779880000/293731 | owl_deprecated | ef:agent/pipeline.deduplication | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v17 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v18 |
| ef:activity/change/20260820T0738569779880000/293732 | dcterms_is_replaced_by | ef:agent/pipeline.deduplication | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v18 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v19 |
| ef:activity/change/20260820T0738569779880000/293733 | is_replaced_by_uuid | ef:agent/pipeline.deduplication | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v19 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v20 |
| ef:activity/change/20260820T0738569779880000/387903 | properties | ef:agent/normalise_property_values | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v20 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v21 |
| ef:activity/change/20260820T0738569779880000/394438 | types | ef:agent/link_flows_to_their_substance | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v21 | ef:flow/f08d395e-6ef0-4ef0-af77-e40b9d5e5a07/v22 |