Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 3 catalogue altLabel value(s): 'G 32883' (grade code), 'Geigy 32883' (trade name), 'NSC 169864' (registry code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=carbamazepine||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'298-46-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-1d474414d40ca5ed: {'298-46-4': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['298-46-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_3387']; candidate_pubchem_cids=[2554, 25255, 158856, 54292446]; selected_pubchem_cids=[2554]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

21
# Step Field From To Why
16,787 bootstrap_labels prefLabel [{"@value":"carbamazepine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… Bootstrapped prefLabel from legacy name field
16,788 bootstrap_labels name carbamazepine Purged legacy name field to enforce prefLabel usage
16,789 bootstrap_labels synonyms ["organic","carbamazepine"] [] Removed legacy synonyms field in favor of structured labels
196,196 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Surface water"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
196,197 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-suwa Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
218,845 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
224,933 normalize_name_case prefLabel [{"@value":"carbamazepine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… [{"@value":"Carbamazepine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
242,955 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H12N2O"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
242,956 enrich_references skos_definition [{"@value":"A dibenzoazepine that is 5H-dibenzo[b,f]azepine carrying a carbamoyl substituent at the azepine nitrogen, u… Merged ChEBI/PubChem definitions into skos:definition
242,957 enrich_references references [] [{"@id":"drugcentral:489","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"c… Added references with provenance; cas_numbers=['298-46-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_3387']; candidate_pubchem_cids=[2554, 25255, 158856, 54292446]; selected_pubchem_cids=[2554]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
252,861 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H12N2O"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H12N2O"… rdkit_pre_consensus from 'C1=CC=C2C(=C1)C=CC3=CC=CC=C3N2C(=O)N'; added: monoisotopic_mass
256,596 chebi_altlabels altLabel [] [{"@value":"5-Carbamoyl-5H-dibenz(b,f)azepine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov… Added 10 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
264,834 consensus_match altLabel [{"@value":"5-Carbamoyl-5H-dibenz(b,f)azepine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov… [{"@value":"5-Carbamoyl-5H-dibenz(b,f)azepine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov… group_key=carbamazepine||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); cas=298-46-4; added Common Chemistry CAS names as altLabel: 5<em>H</em>-Dibenz[<em>b</em>,<em>f</em>]azepine-5-carboxamide, Amizepin, Biston, CBZ, Calepsin, Carbamazepin, Carbatrol, Carbazepine, Carbelan, Epitol, Equetro, Finlepsin, G 32883, Geigy 32883, Karbamazepin, Karbelex, Karberol, MeSH ID: D002220, NSC 169864, Neurotol, Neurotop, Sirtal, Stazepine, Tegretal, Tegretol, Tegretol XR, Tegrital, Telesmin, Timonil; object_uuid=fo-1d474414d40ca5ed
264,835 consensus_match cas_match_labels {"298-46-4":"exactMatch"} group_key=carbamazepine||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'298-46-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-1d474414d40ca5ed: {'298-46-4': 'exactMatch'}
278,067 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H12N2O"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H12N2O"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '5-Carbamoyl-5H-dibenz(b,f)azepine'
284,798 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H12N2O"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H12N2O"… rdkit_post_consensus from 'NC(=O)N1c2ccccc2C=Cc2ccccc21'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
290,665 strip_catalogue_altlabels altLabel [{"@value":"5-Carbamoyl-5H-dibenz(b,f)azepine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov… [{"@value":"5-Carbamoyl-5H-dibenz(b,f)azepine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov… Removed 3 catalogue altLabel value(s): 'G 32883' (grade code), 'Geigy 32883' (trade name), 'NSC 169864' (registry code)
379,131 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/f384da9a-4844-… associations resolved on the elementary layer
392,421 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H12N2O"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C15H12N2O"… typed the way the ontology types it
400,879 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
400,880 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_78298","rdfs:label":"environmental contaminant","http://www.w3.org/2004/0… the substance's answer, copied onto its flow

PROV-O trail

21 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260821T1554374006150000/16787 prefLabel ef:agent/bootstrap_labels ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v0 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v1
ef:activity/change/20260821T1554374006150000/16788 name ef:agent/bootstrap_labels ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v1 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v2
ef:activity/change/20260821T1554374006150000/16789 synonyms ef:agent/bootstrap_labels ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v2 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v3
ef:activity/change/20260821T1554374006150000/196196 context ef:agent/default_context_mapping ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v3 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v4
ef:activity/change/20260821T1554374006150000/196197 context_iri ef:agent/default_context_mapping ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v4 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v5
ef:activity/change/20260821T1554374006150000/218845 unit_iri ef:agent/unit_normalization ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v5 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v6
ef:activity/change/20260821T1554374006150000/224933 prefLabel ef:agent/normalize_name_case ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v6 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v7
ef:activity/change/20260821T1554374006150000/242955 properties ef:agent/enrich_references ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v7 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v8
ef:activity/change/20260821T1554374006150000/242956 skos_definition ef:agent/enrich_references ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v8 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v9
ef:activity/change/20260821T1554374006150000/242957 references ef:agent/enrich_references ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v9 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v10
ef:activity/change/20260821T1554374006150000/252861 properties ef:agent/rdkit_pre_consensus ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v10 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v11
ef:activity/change/20260821T1554374006150000/256596 altLabel ef:agent/chebi_altlabels ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v11 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v12
ef:activity/change/20260821T1554374006150000/264834 altLabel ef:agent/consensus_match ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v12 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v13
ef:activity/change/20260821T1554374006150000/264835 cas_match_labels ef:agent/consensus_match ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v13 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v14
ef:activity/change/20260821T1554374006150000/278067 properties ef:agent/opsin_iupac ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v14 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v15
ef:activity/change/20260821T1554374006150000/284798 properties ef:agent/rdkit_post_consensus ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v15 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v16
ef:activity/change/20260821T1554374006150000/290665 altLabel ef:agent/strip_catalogue_altlabels ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v16 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v17
ef:activity/change/20260821T1554374006150000/379131 concept_associations ef:agent/carry_associations_onto_flows ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v17 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v18
ef:activity/change/20260821T1554374006150000/392421 properties ef:agent/normalise_property_values ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v18 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v19
ef:activity/change/20260821T1554374006150000/400879 types ef:agent/link_flows_to_their_substance ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v19 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v20
ef:activity/change/20260821T1554374006150000/400880 roles ef:agent/link_flows_to_their_substance ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v20 ef:flow/f384da9a-4844-4012-9dc4-e53797ba0345/v21

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