Gyromitrin
Everything that changed this flow. Back to the flow
f41f8ca4-4640-410f-9f4a-c7ec08c73872
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=gyromitrin||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'pubchem']; cas_sources={'16568-02-8': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-be7b9c19f4e9e8ae: {'16568-02-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['16568-02-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_5583']; candidate_pubchem_cids=[27932, 5365327, 9548611]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 630 | bootstrap_labels | prefLabel | — | [{"@value":"gyromitrin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Bootstrapped prefLabel from legacy name field |
| 631 | bootstrap_labels | name | gyromitrin | — | Purged legacy name field to enforce prefLabel usage |
| 632 | bootstrap_labels | synonyms | ["Acetaldehyde N-formyl-N-methylhydrazone","Acetaldehyde N-methyl-N-formylhydrazone","Acetaldehyde N-methylformylhydraz… | [] | Removed legacy synonyms field in favor of structured labels |
| 196,542 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| 196,543 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| 213,550 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 221,248 | normalize_name_case | prefLabel | [{"@value":"gyromitrin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | [{"@value":"Gyromitrin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 227,773 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H8N2O"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=0, commonchemistry_cas=['16568-02-8']) |
| 227,774 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 227,775 | enrich_references | references | [] | [{"@id":"beilstein:1922396","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['16568-02-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_5583']; candidate_pubchem_cids=[27932, 5365327, 9548611]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 248,484 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H8N2O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H8N2O"],… | rdkit_pre_consensus from '[H]C(=O)N(C)N=C([H])C'; added: monoisotopic_mass |
| 254,464 | chebi_altlabels | altLabel | [] | [{"@value":"Acetaldehyde methylformylhydrazone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… | Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 267,498 | consensus_match | altLabel | [{"@value":"Acetaldehyde methylformylhydrazone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… | [{"@value":"Acetaldehyde methylformylhydrazone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… | group_key=gyromitrin||dimension=Environmental > media=Ground > geography=Agricultural; cas=16568-02-8; added Common Chemistry CAS names as altLabel: 2-Ethylidene-1-methylhydrazinecarboxaldehyde, Acetaldehyde <em>N</em>-formyl-<em>N</em>-methylhydrazone, Acetaldehyde-<em>N</em>-methyl-<em>N</em>-formylhydrazone, Ethylidene gyromitrin, Formic acid, ethylidenemethylhydrazide, Hydrazinecarboxaldehyde, 2-ethylidene-1-methyl-, Hydrazinecarboxaldehyde, ethylidenemethyl-; object_uuid=fo-be7b9c19f4e9e8ae |
| 267,499 | consensus_match | cas_match_labels | — | {"16568-02-8":"exactMatch"} | group_key=gyromitrin||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'pubchem']; cas_sources={'16568-02-8': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-be7b9c19f4e9e8ae: {'16568-02-8': 'exactMatch'} |
| 273,626 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H8N2O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H8N2O"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Acetaldehyde methylformylhydrazone' |
| 279,989 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H8N2O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H8N2O"],… | rdkit_post_consensus from 'CC=NN(C)C=O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,001 | dedupe_altlabels | altLabel | [{"@value":"Acetaldehyde methylformylhydrazone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… | [{"@value":"Acetaldehyde methylformylhydrazone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… | Deduplicated altLabel values and removed entries matching prefLabel |
| 379,325 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/f41f8ca4-4640-… | associations resolved on the elementary layer |
| 387,902 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H8N2O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H8N2O"],… | typed the way the ontology types it |
| 394,437 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/630 | prefLabel | ef:agent/bootstrap_labels | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v0 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v1 |
| ef:activity/change/20260820T1416470405690000/631 | name | ef:agent/bootstrap_labels | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v1 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v2 |
| ef:activity/change/20260820T1416470405690000/632 | synonyms | ef:agent/bootstrap_labels | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v2 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v3 |
| ef:activity/change/20260820T1416470405690000/196542 | context | ef:agent/default_context_mapping | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v3 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v4 |
| ef:activity/change/20260820T1416470405690000/196543 | context_iri | ef:agent/default_context_mapping | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v4 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v5 |
| ef:activity/change/20260820T1416470405690000/213550 | unit_iri | ef:agent/unit_normalization | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v5 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v6 |
| ef:activity/change/20260820T1416470405690000/221248 | prefLabel | ef:agent/normalize_name_case | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v6 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v7 |
| ef:activity/change/20260820T1416470405690000/227773 | properties | ef:agent/enrich_references | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v7 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v8 |
| ef:activity/change/20260820T1416470405690000/227774 | skos_definition | ef:agent/enrich_references | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v8 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v9 |
| ef:activity/change/20260820T1416470405690000/227775 | references | ef:agent/enrich_references | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v9 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v10 |
| ef:activity/change/20260820T1416470405690000/248484 | properties | ef:agent/rdkit_pre_consensus | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v10 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v11 |
| ef:activity/change/20260820T1416470405690000/254464 | altLabel | ef:agent/chebi_altlabels | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v11 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v12 |
| ef:activity/change/20260820T1416470405690000/267498 | altLabel | ef:agent/consensus_match | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v12 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v13 |
| ef:activity/change/20260820T1416470405690000/267499 | cas_match_labels | ef:agent/consensus_match | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v13 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v14 |
| ef:activity/change/20260820T1416470405690000/273626 | properties | ef:agent/opsin_iupac | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v14 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v15 |
| ef:activity/change/20260820T1416470405690000/279989 | properties | ef:agent/rdkit_post_consensus | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v15 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v16 |
| ef:activity/change/20260820T1416470405690000/292001 | altLabel | ef:agent/dedupe_altlabels | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v16 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v17 |
| ef:activity/change/20260820T1416470405690000/379325 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v17 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v18 |
| ef:activity/change/20260820T1416470405690000/387902 | properties | ef:agent/normalise_property_values | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v18 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v19 |
| ef:activity/change/20260820T1416470405690000/394437 | types | ef:agent/link_flows_to_their_substance | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v19 | ef:flow/f41f8ca4-4640-410f-9f4a-c7ec08c73872/v20 |