Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'NSC 4165' (registry code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=camphene||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'79-92-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-3b54065645d4d017: {'79-92-5': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['79-92-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_3830']; candidate_pubchem_cids=[3778, 6616, 92221, 23616290]; selected_pubchem_cids=[6616]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

20
# Step Field From To Why
6,533 bootstrap_labels prefLabel [{"@value":"camphene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… Bootstrapped prefLabel from legacy name field
6,534 bootstrap_labels name camphene Purged legacy name field to enforce prefLabel usage
6,535 bootstrap_labels synonyms ["(+/-)-Camphene","(1)-2,2-Dimethyl-3-methylenebicyclo(2.2.1)heptane","2,2-Dimethyl-3-methylenebicyclo(2.2.1)heptane","… [] Removed legacy synonyms field in favor of structured labels
196,984 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
196,985 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
215,520 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
222,592 normalize_name_case prefLabel [{"@value":"camphene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… [{"@value":"Camphene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
233,453 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
233,454 enrich_references skos_definition [{"@value":"A monoterpene with a bicyclic skeleton that is bicyclo[2.2.1]heptane substituted by geminal methyl groups a… Merged ChEBI/PubChem definitions into skos:definition
233,455 enrich_references references [] [{"@id":"bpdb:2109","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"consens… Added references with provenance; cas_numbers=['79-92-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_3830']; candidate_pubchem_cids=[3778, 6616, 92221, 23616290]; selected_pubchem_cids=[6616]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
250,124 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… rdkit_pre_consensus from 'C=C1C2CCC(C2)C1(C)C'; added: monoisotopic_mass
255,180 chebi_altlabels altLabel [] [{"@value":"2,2-dimethyl-3-methylenebicyclo[2.2.1]heptane","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altl… Added 6 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
264,824 consensus_match altLabel [{"@value":"2,2-dimethyl-3-methylenebicyclo[2.2.1]heptane","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altl… [{"@value":"2,2-dimethyl-3-methylenebicyclo[2.2.1]heptane","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altl… group_key=camphene||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); cas=79-92-5; added Common Chemistry CAS names as altLabel: (±)-Camphene, 2-Methylene-3,3-dimethylbicyclo[2.2.1]heptane, <em>dl</em>-Camphene, Bicyclo[2.2.1]heptane, 2,2-dimethyl-3-methylene-, NSC 4165, YS Camphene; object_uuid=fo-3b54065645d4d017
264,825 consensus_match cas_match_labels {"79-92-5":"exactMatch"} group_key=camphene||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'79-92-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-3b54065645d4d017: {'79-92-5': 'exactMatch'}
275,261 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Camphene'
281,767 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… rdkit_post_consensus from 'C=C1C2CCC(C2)C1(C)C'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
288,586 strip_catalogue_altlabels altLabel [{"@value":"2,2-dimethyl-3-methylenebicyclo[2.2.1]heptane","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altl… [{"@value":"2,2-dimethyl-3-methylenebicyclo[2.2.1]heptane","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altl… Removed 1 catalogue altLabel value(s): 'NSC 4165' (registry code)
379,526 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/f4e01929-729e-… associations resolved on the elementary layer
389,563 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16"],"… typed the way the ontology types it
396,768 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

20 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260821T1554374006150000/6533 prefLabel ef:agent/bootstrap_labels ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v0 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v1
ef:activity/change/20260821T1554374006150000/6534 name ef:agent/bootstrap_labels ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v1 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v2
ef:activity/change/20260821T1554374006150000/6535 synonyms ef:agent/bootstrap_labels ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v2 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v3
ef:activity/change/20260821T1554374006150000/196984 context ef:agent/default_context_mapping ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v3 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v4
ef:activity/change/20260821T1554374006150000/196985 context_iri ef:agent/default_context_mapping ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v4 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v5
ef:activity/change/20260821T1554374006150000/215520 unit_iri ef:agent/unit_normalization ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v5 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v6
ef:activity/change/20260821T1554374006150000/222592 prefLabel ef:agent/normalize_name_case ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v6 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v7
ef:activity/change/20260821T1554374006150000/233453 properties ef:agent/enrich_references ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v7 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v8
ef:activity/change/20260821T1554374006150000/233454 skos_definition ef:agent/enrich_references ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v8 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v9
ef:activity/change/20260821T1554374006150000/233455 references ef:agent/enrich_references ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v9 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v10
ef:activity/change/20260821T1554374006150000/250124 properties ef:agent/rdkit_pre_consensus ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v10 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v11
ef:activity/change/20260821T1554374006150000/255180 altLabel ef:agent/chebi_altlabels ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v11 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v12
ef:activity/change/20260821T1554374006150000/264824 altLabel ef:agent/consensus_match ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v12 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v13
ef:activity/change/20260821T1554374006150000/264825 cas_match_labels ef:agent/consensus_match ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v13 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v14
ef:activity/change/20260821T1554374006150000/275261 properties ef:agent/opsin_iupac ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v14 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v15
ef:activity/change/20260821T1554374006150000/281767 properties ef:agent/rdkit_post_consensus ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v15 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v16
ef:activity/change/20260821T1554374006150000/288586 altLabel ef:agent/strip_catalogue_altlabels ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v16 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v17
ef:activity/change/20260821T1554374006150000/379526 concept_associations ef:agent/carry_associations_onto_flows ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v17 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v18
ef:activity/change/20260821T1554374006150000/389563 properties ef:agent/normalise_property_values ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v18 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v19
ef:activity/change/20260821T1554374006150000/396768 types ef:agent/link_flows_to_their_substance ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v19 ef:flow/f4e01929-729e-482c-bfca-129f935dbd8d/v20

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